Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19b19
(843 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X15805-1|CAA33804.1| 844|Drosophila melanogaster protein ( Dros... 450 e-126
AY075481-1|AAL68292.1| 844|Drosophila melanogaster RE38659p pro... 450 e-126
AE014134-3534|AAN11135.1| 832|Drosophila melanogaster CG2238-PC... 450 e-126
AE014134-3533|AAG22125.2| 832|Drosophila melanogaster CG2238-PB... 450 e-126
AE014134-3532|AAF57226.2| 844|Drosophila melanogaster CG2238-PA... 450 e-126
AY089551-1|AAL90289.1| 975|Drosophila melanogaster LD28793p pro... 221 1e-57
AE014297-4212|AAF56769.1| 975|Drosophila melanogaster CG4849-PA... 221 1e-57
AY058769-1|AAL13998.1| 949|Drosophila melanogaster SD04694p pro... 92 1e-18
AE014296-2740|AAF49461.3| 1033|Drosophila melanogaster CG33158-P... 92 1e-18
AE014134-1251|AAF52495.2| 745|Drosophila melanogaster CG4567-PA... 61 2e-09
AE014297-3196|AAF56031.2| 692|Drosophila melanogaster CG31159-P... 46 5e-05
X70644-1|CAA49989.1| 847|Drosophila melanogaster histidine deca... 30 3.5
AE013599-1049|AAF58823.1| 847|Drosophila melanogaster CG3454-PA... 30 3.5
>X15805-1|CAA33804.1| 844|Drosophila melanogaster protein (
Drosophila DMEF2 genefor the translation elongation
factor 2. ).
Length = 844
Score = 450 bits (1108), Expect = e-126
Identities = 197/225 (87%), Positives = 215/225 (95%)
Frame = -3
Query: 814 RDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQ 635
+D+FK RARYL+EKY+YDVTEARKIWCFGP+GTGPN ++DC+K VQYLNEIKDSVVAGFQ
Sbjct: 611 KDEFKARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQ 670
Query: 634 WAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPV 455
WA+KEG++A+ENLRGVRFNIYDVTLH DAIHRGGGQIIPTTRRCLYA +TA+PRLMEPV
Sbjct: 671 WASKEGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPV 730
Query: 454 YLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNT 275
YLCEIQCPEVAVGGIYGVLNRRRGHVFEE+QV GTPMF+VKAYLPVNESFGFTADLRSNT
Sbjct: 731 YLCEIQCPEVAVGGIYGVLNRRRGHVFEENQVVGTPMFVVKAYLPVNESFGFTADLRSNT 790
Query: 274 GGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 140
GGQAFPQCVFDHWQVLPGDP EP SKPY +VQ+TRKRKGLKEGLP
Sbjct: 791 GGQAFPQCVFDHWQVLPGDPSEPSSKPYAIVQDTRKRKGLKEGLP 835
>AY075481-1|AAL68292.1| 844|Drosophila melanogaster RE38659p protein.
Length = 844
Score = 450 bits (1108), Expect = e-126
Identities = 197/225 (87%), Positives = 215/225 (95%)
Frame = -3
Query: 814 RDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQ 635
+D+FK RARYL+EKY+YDVTEARKIWCFGP+GTGPN ++DC+K VQYLNEIKDSVVAGFQ
Sbjct: 611 KDEFKARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQ 670
Query: 634 WAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPV 455
WA+KEG++A+ENLRGVRFNIYDVTLH DAIHRGGGQIIPTTRRCLYA +TA+PRLMEPV
Sbjct: 671 WASKEGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPV 730
Query: 454 YLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNT 275
YLCEIQCPEVAVGGIYGVLNRRRGHVFEE+QV GTPMF+VKAYLPVNESFGFTADLRSNT
Sbjct: 731 YLCEIQCPEVAVGGIYGVLNRRRGHVFEENQVVGTPMFVVKAYLPVNESFGFTADLRSNT 790
Query: 274 GGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 140
GGQAFPQCVFDHWQVLPGDP EP SKPY +VQ+TRKRKGLKEGLP
Sbjct: 791 GGQAFPQCVFDHWQVLPGDPSEPSSKPYAIVQDTRKRKGLKEGLP 835
>AE014134-3534|AAN11135.1| 832|Drosophila melanogaster CG2238-PC,
isoform C protein.
Length = 832
Score = 450 bits (1108), Expect = e-126
Identities = 197/225 (87%), Positives = 215/225 (95%)
Frame = -3
Query: 814 RDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQ 635
+D+FK RARYL+EKY+YDVTEARKIWCFGP+GTGPN ++DC+K VQYLNEIKDSVVAGFQ
Sbjct: 599 KDEFKARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQ 658
Query: 634 WAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPV 455
WA+KEG++A+ENLRGVRFNIYDVTLH DAIHRGGGQIIPTTRRCLYA +TA+PRLMEPV
Sbjct: 659 WASKEGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPV 718
Query: 454 YLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNT 275
YLCEIQCPEVAVGGIYGVLNRRRGHVFEE+QV GTPMF+VKAYLPVNESFGFTADLRSNT
Sbjct: 719 YLCEIQCPEVAVGGIYGVLNRRRGHVFEENQVVGTPMFVVKAYLPVNESFGFTADLRSNT 778
Query: 274 GGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 140
GGQAFPQCVFDHWQVLPGDP EP SKPY +VQ+TRKRKGLKEGLP
Sbjct: 779 GGQAFPQCVFDHWQVLPGDPSEPSSKPYAIVQDTRKRKGLKEGLP 823
>AE014134-3533|AAG22125.2| 832|Drosophila melanogaster CG2238-PB,
isoform B protein.
Length = 832
Score = 450 bits (1108), Expect = e-126
Identities = 197/225 (87%), Positives = 215/225 (95%)
Frame = -3
Query: 814 RDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQ 635
+D+FK RARYL+EKY+YDVTEARKIWCFGP+GTGPN ++DC+K VQYLNEIKDSVVAGFQ
Sbjct: 599 KDEFKARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQ 658
Query: 634 WAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPV 455
WA+KEG++A+ENLRGVRFNIYDVTLH DAIHRGGGQIIPTTRRCLYA +TA+PRLMEPV
Sbjct: 659 WASKEGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPV 718
Query: 454 YLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNT 275
YLCEIQCPEVAVGGIYGVLNRRRGHVFEE+QV GTPMF+VKAYLPVNESFGFTADLRSNT
Sbjct: 719 YLCEIQCPEVAVGGIYGVLNRRRGHVFEENQVVGTPMFVVKAYLPVNESFGFTADLRSNT 778
Query: 274 GGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 140
GGQAFPQCVFDHWQVLPGDP EP SKPY +VQ+TRKRKGLKEGLP
Sbjct: 779 GGQAFPQCVFDHWQVLPGDPSEPSSKPYAIVQDTRKRKGLKEGLP 823
>AE014134-3532|AAF57226.2| 844|Drosophila melanogaster CG2238-PA,
isoform A protein.
Length = 844
Score = 450 bits (1108), Expect = e-126
Identities = 197/225 (87%), Positives = 215/225 (95%)
Frame = -3
Query: 814 RDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQ 635
+D+FK RARYL+EKY+YDVTEARKIWCFGP+GTGPN ++DC+K VQYLNEIKDSVVAGFQ
Sbjct: 611 KDEFKARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQ 670
Query: 634 WAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPV 455
WA+KEG++A+ENLRGVRFNIYDVTLH DAIHRGGGQIIPTTRRCLYA +TA+PRLMEPV
Sbjct: 671 WASKEGILADENLRGVRFNIYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKPRLMEPV 730
Query: 454 YLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNT 275
YLCEIQCPEVAVGGIYGVLNRRRGHVFEE+QV GTPMF+VKAYLPVNESFGFTADLRSNT
Sbjct: 731 YLCEIQCPEVAVGGIYGVLNRRRGHVFEENQVVGTPMFVVKAYLPVNESFGFTADLRSNT 790
Query: 274 GGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 140
GGQAFPQCVFDHWQVLPGDP EP SKPY +VQ+TRKRKGLKEGLP
Sbjct: 791 GGQAFPQCVFDHWQVLPGDPSEPSSKPYAIVQDTRKRKGLKEGLP 835
>AY089551-1|AAL90289.1| 975|Drosophila melanogaster LD28793p protein.
Length = 975
Score = 221 bits (539), Expect = 1e-57
Identities = 108/234 (46%), Positives = 146/234 (62%), Gaps = 16/234 (6%)
Frame = -3
Query: 802 KTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQ 635
K + Y++D+ AR IW FGP+ TGPNILVD + + L +KDS+V GFQ
Sbjct: 715 KRIGEFFQVNYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKNLLTAVKDSIVQGFQ 774
Query: 634 WAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPV 455
W +EG + EE +R V+F I D + +A+HRGGGQIIPT RR Y+ L A PRLMEP
Sbjct: 775 WGTREGPLCEEPIRNVKFKILDGVIANEALHRGGGQIIPTARRVAYSAFLMATPRLMEPY 834
Query: 454 YLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNT 275
E+Q P V +Y VL RRRGHV +++ V+G+P++ +KA++P +SFGF DLR++T
Sbjct: 835 LFVEVQAPADCVSAVYTVLARRRGHVTQDAPVSGSPIYTIKAFIPAIDSFGFETDLRTHT 894
Query: 274 GGQAFPQCVFDHWQVLPGD---------PCEPQSKPY---NVVQETRKRKGLKE 149
GQAF VF HWQ++PGD P EPQ + + +TR+RKGL E
Sbjct: 895 QGQAFCLSVFHHWQIVPGDPLDKSIIIRPLEPQQASHLAREFMIKTRRRKGLSE 948
>AE014297-4212|AAF56769.1| 975|Drosophila melanogaster CG4849-PA
protein.
Length = 975
Score = 221 bits (539), Expect = 1e-57
Identities = 108/234 (46%), Positives = 146/234 (62%), Gaps = 16/234 (6%)
Frame = -3
Query: 802 KTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQ 635
K + Y++D+ AR IW FGP+ TGPNILVD + + L +KDS+V GFQ
Sbjct: 715 KRIGEFFQVNYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKNLLTAVKDSIVQGFQ 774
Query: 634 WAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPV 455
W +EG + EE +R V+F I D + +A+HRGGGQIIPT RR Y+ L A PRLMEP
Sbjct: 775 WGTREGPLCEEPIRNVKFKILDGVIANEALHRGGGQIIPTARRVAYSAFLMATPRLMEPY 834
Query: 454 YLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNT 275
E+Q P V +Y VL RRRGHV +++ V+G+P++ +KA++P +SFGF DLR++T
Sbjct: 835 LFVEVQAPADCVSAVYTVLARRRGHVTQDAPVSGSPIYTIKAFIPAIDSFGFETDLRTHT 894
Query: 274 GGQAFPQCVFDHWQVLPGD---------PCEPQSKPY---NVVQETRKRKGLKE 149
GQAF VF HWQ++PGD P EPQ + + +TR+RKGL E
Sbjct: 895 QGQAFCLSVFHHWQIVPGDPLDKSIIIRPLEPQQASHLAREFMIKTRRRKGLSE 948
>AY058769-1|AAL13998.1| 949|Drosophila melanogaster SD04694p protein.
Length = 949
Score = 91.9 bits (218), Expect = 1e-18
Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Frame = -3
Query: 745 KIWCFGPEGTGPNILVDCSKGVQ-------------------YLNEIKDSVVAGFQWAAK 623
+IW GP G NIL++ S Q + S+V GFQ +
Sbjct: 693 RIWALGPRNCGTNILLNLSDYEQPDFWSSHAKSDTDIRSKTDPRKDFNSSLVNGFQITSV 752
Query: 622 EGVMAEENLRGVRFNIYDVTLHT---DAIHRG--GGQIIPTTRRCLYACLLTAQPRLMEP 458
G + EE ++GV F + + ++ + D RG GQ++ + RL+ P
Sbjct: 753 AGPLCEEPMQGVCFAVLEWSIQSEGEDLNSRGPFSGQVLTAAKEVCRQAFQNQPQRLVTP 812
Query: 457 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSN 278
+Y C I +G +Y V+ RR G + G+ F V LPV ESF F ++R
Sbjct: 813 MYSCNIVVNAEMLGKMYAVIGRRHGKILSGDLTQGSGNFAVTCLLPVIESFNFAQEMRKQ 872
Query: 277 TGGQAFPQCVFDHWQVLPGDP 215
T G A PQ +F HW+V+ DP
Sbjct: 873 TSGLACPQLMFSHWEVIDIDP 893
>AE014296-2740|AAF49461.3| 1033|Drosophila melanogaster CG33158-PB
protein.
Length = 1033
Score = 91.9 bits (218), Expect = 1e-18
Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Frame = -3
Query: 745 KIWCFGPEGTGPNILVDCSKGVQ-------------------YLNEIKDSVVAGFQWAAK 623
+IW GP G NIL++ S Q + S+V GFQ +
Sbjct: 777 RIWALGPRNCGTNILLNLSDYEQPDFWSSHAKSDTDIRSKTDPRKDFNSSLVNGFQITSV 836
Query: 622 EGVMAEENLRGVRFNIYDVTLHT---DAIHRG--GGQIIPTTRRCLYACLLTAQPRLMEP 458
G + EE ++GV F + + ++ + D RG GQ++ + RL+ P
Sbjct: 837 AGPLCEEPMQGVCFAVLEWSIQSEGEDLNSRGPFSGQVLTAAKEVCRQAFQNQPQRLVTP 896
Query: 457 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSN 278
+Y C I +G +Y V+ RR G + G+ F V LPV ESF F ++R
Sbjct: 897 MYSCNIVVNAEMLGKMYAVIGRRHGKILSGDLTQGSGNFAVTCLLPVIESFNFAQEMRKQ 956
Query: 277 TGGQAFPQCVFDHWQVLPGDP 215
T G A PQ +F HW+V+ DP
Sbjct: 957 TSGLACPQLMFSHWEVIDIDP 977
>AE014134-1251|AAF52495.2| 745|Drosophila melanogaster CG4567-PA
protein.
Length = 745
Score = 61.3 bits (142), Expect = 2e-09
Identities = 43/184 (23%), Positives = 83/184 (45%)
Frame = -3
Query: 700 VDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQII 521
VD + G + V G++ A++G+++ L G+RF + D H + +
Sbjct: 564 VDETVGTNVPKQFVPGVEKGYREMAEKGMLSGHKLSGIRFRLQDGGHHI--VDSSELAFM 621
Query: 520 PTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMF 341
+ +++EP+ L E+ PE G + G L++R G + G F
Sbjct: 622 LAAHGAIKEVFQNGSWQILEPIMLVEVTAPEEFQGAVMGHLSKRHGIITGTEGTEG--WF 679
Query: 340 IVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRK 161
V A +P+N+ FG+ +LRS+T G+ + + PC P + +V++ ++ +
Sbjct: 680 TVYAEVPLNDMFGYAGELRSSTQGKGEFTMEYSRY-----SPCLPDVQD-QIVRQYQESQ 733
Query: 160 GLKE 149
GL +
Sbjct: 734 GLAQ 737
>AE014297-3196|AAF56031.2| 692|Drosophila melanogaster CG31159-PA
protein.
Length = 692
Score = 46.4 bits (105), Expect = 5e-05
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Frame = -3
Query: 568 VTLHTDAIHRGGGQ--IIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLN 395
+ LH I RG ++ T +C+ L T+ RL+EP+ +I P + GI L+
Sbjct: 562 IRLHNATIGRGTADSFVMATAAQCVQKLLSTSGTRLLEPIMALQIVAPSERISGIMADLS 621
Query: 394 RRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQA 263
RRR + + G ++ P+ E G+++ LR+ + G A
Sbjct: 622 RRRA-LINDVLPKGERNKMILVNAPLAELSGYSSALRTISSGTA 664
>X70644-1|CAA49989.1| 847|Drosophila melanogaster histidine
decarboxylase protein.
Length = 847
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = -3
Query: 643 GFQWAAKEGVMAEE----NLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 476
GF WA+ E N G + D LH + +GGG + T CLL +
Sbjct: 102 GFTWASSPACTELEIIVMNWLGKMIGLPDAFLHLSSQSQGGGVLQTTASEATLVCLLAGR 161
Query: 475 PRLME 461
R ++
Sbjct: 162 TRAIQ 166
>AE013599-1049|AAF58823.1| 847|Drosophila melanogaster CG3454-PA
protein.
Length = 847
Score = 30.3 bits (65), Expect = 3.5
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Frame = -3
Query: 643 GFQWAAKEGVMAEE----NLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 476
GF WA+ E N G + D LH + +GGG + T CLL +
Sbjct: 102 GFTWASSPACTELEIIVMNWLGKMIGLPDAFLHLSSQSQGGGVLQTTASEATLVCLLAGR 161
Query: 475 PRLME 461
R ++
Sbjct: 162 TRAIQ 166
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,006,922
Number of Sequences: 53049
Number of extensions: 1008282
Number of successful extensions: 2649
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2646
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4024321392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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