Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19b19
(843 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 418 e-117
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 414 e-116
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 213 2e-55
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 208 3e-54
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 82 4e-16
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 47 2e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 30 1.8
Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical pr... 29 5.5
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 5.5
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical ... 28 9.5
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 418 bits (1029), Expect = e-117
Identities = 185/225 (82%), Positives = 206/225 (91%)
Frame = -3
Query: 814 RDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQ 635
RD+FK RA+ L EKYEYDVTEARKIWCFGP+GTGPN+L+D +KGVQYLNEIKDSVVAGFQ
Sbjct: 619 RDEFKARAKILAEKYEYDVTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQ 678
Query: 634 WAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPV 455
WA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR YA +LTA+PRL+EPV
Sbjct: 679 WATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPV 738
Query: 454 YLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNT 275
YL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNT
Sbjct: 739 YLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNT 798
Query: 274 GGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 140
GGQAFPQCVFDHWQVLPGDP E +KP +V +TRKRKGLKEG+P
Sbjct: 799 GGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 414 bits (1020), Expect = e-116
Identities = 184/225 (81%), Positives = 205/225 (91%)
Frame = -3
Query: 814 RDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQ 635
RD+FK RA+Y EKYEY VTEARKIWCFGP+GTGPN+L+D +KGVQYLNEIKDSVVAGFQ
Sbjct: 619 RDEFKARAKYPGEKYEYAVTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEIKDSVVAGFQ 678
Query: 634 WAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPV 455
WA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR YA +LTA+PRL+EPV
Sbjct: 679 WATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPV 738
Query: 454 YLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNT 275
YL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNT
Sbjct: 739 YLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNT 798
Query: 274 GGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 140
GGQAFPQCVFDHWQVLPGDP E +KP +V +TRKRKGLKEG+P
Sbjct: 799 GGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 213 bits (519), Expect = 2e-55
Identities = 102/229 (44%), Positives = 144/229 (62%), Gaps = 16/229 (6%)
Frame = -3
Query: 787 YLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKE 620
+ KY +D+ AR IW FGP+ TGPNIL+D + + L+ +++S+V GFQWA +E
Sbjct: 721 FFQTKYNWDLLAARSIWAFGPDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATRE 780
Query: 619 GVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEI 440
G + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+
Sbjct: 781 GPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEV 840
Query: 439 QCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAF 260
P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR +T GQAF
Sbjct: 841 VAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAF 900
Query: 259 PQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 149
F HWQ++PGDP + Q P+ + +TR+RKGL E
Sbjct: 901 CMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 949
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 208 bits (509), Expect = 3e-54
Identities = 101/229 (44%), Positives = 143/229 (62%), Gaps = 16/229 (6%)
Frame = -3
Query: 787 YLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKE 620
+ KY +D+ AR IW FG + TGPNIL+D + + L+ +++S+V GFQWA +E
Sbjct: 596 FFQTKYNWDLLAARSIWAFGLDTTGPNILLDDTLPSEVDKHLLSTVRESLVQGFQWATRE 655
Query: 619 GVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEI 440
G + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+
Sbjct: 656 GPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEV 715
Query: 439 QCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAF 260
P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR +T GQAF
Sbjct: 716 VAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAF 775
Query: 259 PQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 149
F HWQ++PGDP + Q P+ + +TR+RKGL E
Sbjct: 776 CMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 824
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 82.2 bits (194), Expect = 4e-16
Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 12/189 (6%)
Frame = -3
Query: 745 KIWCFGPEGTGPNILVDCSKGVQY----------LNEIKDSVVAGFQWAAKEGVMAEENL 596
+IW FGPE NIL + + + ++VAGF+ G + E +
Sbjct: 653 QIWAFGPERARANILFNNVQNYDRDSVWRKTEFGVRRYDQALVAGFELFCNTGPLCNEIM 712
Query: 595 RGVRFNI--YDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVA 422
G+ + ++V AI GGQ++ + A RL+ +Y C + A
Sbjct: 713 HGIAVIVEEWNVDEEDGAI---GGQMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQA 769
Query: 421 VGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFD 242
+G ++ VL++R+ V E T +F V + +PV ESF F LR T G A Q F
Sbjct: 770 LGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFS 829
Query: 241 HWQVLPGDP 215
HWQV+ DP
Sbjct: 830 HWQVIDEDP 838
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/55 (43%), Positives = 28/55 (50%)
Frame = -3
Query: 379 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 215
V E T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 41.9 bits (94), Expect = 5e-04
Identities = 31/126 (24%), Positives = 53/126 (42%)
Frame = -3
Query: 643 GFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLM 464
G EG + + + G+ I D + H A+ +I T + + A L+
Sbjct: 586 GLDAIVAEGPLIKSRIAGIHVRIQDGSTH--AVDSTEIAMINTMQNMMRESFEKANWLLL 643
Query: 463 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 284
EP+ E P G + L +R + G I +A P+++ FG+T++LR
Sbjct: 644 EPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELR 701
Query: 283 SNTGGQ 266
S T G+
Sbjct: 702 SLTEGK 707
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = -3
Query: 535 GGQIIPT-----TRRCLYACLLTAQPRLMEPVYLCEIQCP-EVAVGGIYGVLNRRRGHVF 374
GG+I P ++C+ L + + L EPV +I+ + I L RRR H
Sbjct: 565 GGKINPALLSACAQKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFE 624
Query: 373 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 269
T + + A LP++E+ + +R+ T G
Sbjct: 625 HSDATESTEIRRICAILPLSETENLSKTVRTLTSG 659
>Z81449-2|CAD88214.1| 459|Caenorhabditis elegans Hypothetical
protein C46F11.2b protein.
Length = 459
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 666 KLRTLLWLDSSGPLRKELWLKRICVVLDST 577
K++TL+W PL KEL L+R+ V D +
Sbjct: 256 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 285
>Z81449-1|CAB03763.1| 473|Caenorhabditis elegans Hypothetical
protein C46F11.2a protein.
Length = 473
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 666 KLRTLLWLDSSGPLRKELWLKRICVVLDST 577
K++TL+W PL KEL L+R+ V D +
Sbjct: 270 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 299
>Z73906-3|CAE45047.1| 470|Caenorhabditis elegans Hypothetical
protein D2030.2b protein.
Length = 470
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = -1
Query: 807 TSRLALGILQKSTNTMLPKPVRFGALAPRVPAPTSWWIAPKEFSTSMKLRTLLWLDSSGP 628
+S L I+Q+ +N P P A +PR APT + KE S ++ +L + SG
Sbjct: 97 SSELRNSIMQQQSNNQPPSP----AQSPRNAAPTFRALPEKEQSVRLEKSNVLLVGPSG- 151
Query: 627 LRKELWLKRICVVLD 583
+ K + + VLD
Sbjct: 152 VGKTFLTQTLARVLD 166
>Z73906-2|CAA98115.1| 586|Caenorhabditis elegans Hypothetical
protein D2030.2a protein.
Length = 586
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/75 (30%), Positives = 36/75 (48%)
Frame = -1
Query: 807 TSRLALGILQKSTNTMLPKPVRFGALAPRVPAPTSWWIAPKEFSTSMKLRTLLWLDSSGP 628
+S L I+Q+ +N P P A +PR APT + KE S ++ +L + SG
Sbjct: 213 SSELRNSIMQQQSNNQPPSP----AQSPRNAAPTFRALPEKEQSVRLEKSNVLLVGPSG- 267
Query: 627 LRKELWLKRICVVLD 583
+ K + + VLD
Sbjct: 268 VGKTFLTQTLARVLD 282
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 224 REDLPMVEYALREGLSAGVGTQIGSKTERLID 319
+ED+ +EY + E ++ +GTQ+ KT +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 535 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 389
G Q + T RCL A +L + +M + + + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065
>AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical
protein T24A6.11 protein.
Length = 359
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 3 LRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 110
LR+C+ C + TC K FP ++V L+ ++VV
Sbjct: 294 LRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,063,386
Number of Sequences: 27780
Number of extensions: 495539
Number of successful extensions: 1346
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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