Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19b18
(352 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT029953-1|ABM92827.1| 104|Drosophila melanogaster IP17351p pro... 140 6e-34
AE014134-1388|AAF52596.2| 104|Drosophila melanogaster CG7424-PA... 140 6e-34
BT024261-1|ABC86323.1| 121|Drosophila melanogaster IP15820p pro... 123 7e-29
AE014297-2785|AAX52968.1| 512|Drosophila melanogaster CG33518-P... 29 1.3
BT011125-1|AAR82792.1| 1030|Drosophila melanogaster LD07466p pro... 27 6.7
AY051898-1|AAK93322.1| 1232|Drosophila melanogaster LD38671p pro... 27 6.7
AE014297-4146|AAF56723.1| 1284|Drosophila melanogaster CG5634-PA... 27 6.7
AJ238847-1|CAB52798.1| 1301|Drosophila melanogaster drosophila d... 27 8.9
AF132179-1|AAD34767.1| 1301|Drosophila melanogaster unknown prot... 27 8.9
AE013599-2691|AAM68451.1| 1301|Drosophila melanogaster CG5170-PF... 27 8.9
AE013599-2690|AAM68450.1| 1301|Drosophila melanogaster CG5170-PE... 27 8.9
AE013599-2689|AAM68449.1| 1301|Drosophila melanogaster CG5170-PD... 27 8.9
AE013599-2688|AAF57691.2| 1301|Drosophila melanogaster CG5170-PC... 27 8.9
AE013599-2687|AAS64810.1| 1301|Drosophila melanogaster CG5170-PB... 27 8.9
AE013599-2686|AAS64809.1| 1301|Drosophila melanogaster CG5170-PA... 27 8.9
>BT029953-1|ABM92827.1| 104|Drosophila melanogaster IP17351p
protein.
Length = 104
Score = 140 bits (338), Expect = 6e-34
Identities = 67/99 (67%), Positives = 73/99 (73%)
Frame = -2
Query: 309 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 130
MVNVPKQRRT+ V+QYKKSKER AQGRRRYDRKQQG+GGQ+KPIF
Sbjct: 1 MVNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKKA 60
Query: 129 XXXXKIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 13
KIVLR+EC +CK R Q LKRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKG 99
>AE014134-1388|AAF52596.2| 104|Drosophila melanogaster CG7424-PA
protein.
Length = 104
Score = 140 bits (338), Expect = 6e-34
Identities = 67/99 (67%), Positives = 73/99 (73%)
Frame = -2
Query: 309 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 130
MVNVPKQRRT+ V+QYKKSKER AQGRRRYDRKQQG+GGQ+KPIF
Sbjct: 1 MVNVPKQRRTFCKKCKVHKLHKVTQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKKA 60
Query: 129 XXXXKIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 13
KIVLR+EC +CK R Q LKRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRMECTECKYRKQTPLKRCKHFELGGDKKRKG 99
>BT024261-1|ABC86323.1| 121|Drosophila melanogaster IP15820p
protein.
Length = 121
Score = 123 bits (296), Expect = 7e-29
Identities = 56/76 (73%), Positives = 61/76 (80%)
Frame = -2
Query: 240 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXKIVLRLECADCKVRSQVAL 61
+QYKKSKER AQGRRRYDRKQQG+GGQ+KPIF KIVLR+EC +CK R Q L
Sbjct: 41 TQYKKSKERKGAQGRRRYDRKQQGFGGQTKPIFRKKAKTTKKIVLRMECTECKYRKQTPL 100
Query: 60 KRCKHFELGGDKKRKG 13
KRCKHFELGGDKKRKG
Sbjct: 101 KRCKHFELGGDKKRKG 116
>AE014297-2785|AAX52968.1| 512|Drosophila melanogaster CG33518-PA
protein.
Length = 512
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Frame = +3
Query: 9 LVPFSSCHH-----RAQSACISSMQPVISPCNLH 95
L P S+CH R +C SS+QP+++ C LH
Sbjct: 153 LSPQSTCHTALDTCREDPSCSSSLQPMLTHCELH 186
>BT011125-1|AAR82792.1| 1030|Drosophila melanogaster LD07466p
protein.
Length = 1030
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 206 AACLSLDFLYCDTLCTLWHLH 268
A C S D L D C WH H
Sbjct: 272 AKCYSQDLLVYDVYCDSWHYH 292
>AY051898-1|AAK93322.1| 1232|Drosophila melanogaster LD38671p
protein.
Length = 1232
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 206 AACLSLDFLYCDTLCTLWHLH 268
A C S D L D C WH H
Sbjct: 474 AKCYSQDLLVYDVYCDSWHYH 494
>AE014297-4146|AAF56723.1| 1284|Drosophila melanogaster CG5634-PA
protein.
Length = 1284
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 206 AACLSLDFLYCDTLCTLWHLH 268
A C S D L D C WH H
Sbjct: 526 AKCYSQDLLVYDVYCDSWHYH 546
>AJ238847-1|CAB52798.1| 1301|Drosophila melanogaster drosophila
dodeca-satellite protein1 protein.
Length = 1301
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -3
Query: 197 EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVQIAR*DHR 69
++++I + V + + K + K CS +SV++A+ HR
Sbjct: 284 DEIVISGEKDAVAAAKAKVEAIYKDMEKKCSTVSVEVAKPKHR 326
>AF132179-1|AAD34767.1| 1301|Drosophila melanogaster unknown
protein.
Length = 1301
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -3
Query: 197 EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVQIAR*DHR 69
++++I + V + + K + K CS +SV++A+ HR
Sbjct: 284 DEIVISGEKDAVAAAKAKVEAIYKDMEKKCSTVSVEVAKPKHR 326
>AE013599-2691|AAM68451.1| 1301|Drosophila melanogaster CG5170-PF,
isoform F protein.
Length = 1301
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -3
Query: 197 EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVQIAR*DHR 69
++++I + V + + K + K CS +SV++A+ HR
Sbjct: 284 DEIVISGEKDAVAAAKAKVEAIYKDMEKKCSTVSVEVAKPKHR 326
>AE013599-2690|AAM68450.1| 1301|Drosophila melanogaster CG5170-PE,
isoform E protein.
Length = 1301
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -3
Query: 197 EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVQIAR*DHR 69
++++I + V + + K + K CS +SV++A+ HR
Sbjct: 284 DEIVISGEKDAVAAAKAKVEAIYKDMEKKCSTVSVEVAKPKHR 326
>AE013599-2689|AAM68449.1| 1301|Drosophila melanogaster CG5170-PD,
isoform D protein.
Length = 1301
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -3
Query: 197 EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVQIAR*DHR 69
++++I + V + + K + K CS +SV++A+ HR
Sbjct: 284 DEIVISGEKDAVAAAKAKVEAIYKDMEKKCSTVSVEVAKPKHR 326
>AE013599-2688|AAF57691.2| 1301|Drosophila melanogaster CG5170-PC,
isoform C protein.
Length = 1301
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -3
Query: 197 EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVQIAR*DHR 69
++++I + V + + K + K CS +SV++A+ HR
Sbjct: 284 DEIVISGEKDAVAAAKAKVEAIYKDMEKKCSTVSVEVAKPKHR 326
>AE013599-2687|AAS64810.1| 1301|Drosophila melanogaster CG5170-PB,
isoform B protein.
Length = 1301
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -3
Query: 197 EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVQIAR*DHR 69
++++I + V + + K + K CS +SV++A+ HR
Sbjct: 284 DEIVISGEKDAVAAAKAKVEAIYKDMEKKCSTVSVEVAKPKHR 326
>AE013599-2686|AAS64809.1| 1301|Drosophila melanogaster CG5170-PA,
isoform A protein.
Length = 1301
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -3
Query: 197 EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVQIAR*DHR 69
++++I + V + + K + K CS +SV++A+ HR
Sbjct: 284 DEIVISGEKDAVAAAKAKVEAIYKDMEKKCSTVSVEVAKPKHR 326
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,453,000
Number of Sequences: 53049
Number of extensions: 296954
Number of successful extensions: 944
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 838265760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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