Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19b15
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    28   1.3  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    26   5.1  
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    26   5.1  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   6.7  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.9  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   8.9  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    25   8.9  

>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 395 PINISISHTFEFIVAIGSVSGHKNSL*PVNS 487
           P+NI+I +  EF+VA  +VS  +    P+NS
Sbjct: 54  PVNIAIPNGLEFVVAFYAVSWQRAICGPLNS 84


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 680 PCLNQHINAICTLATNRNNYSCLC 751
           P +N+  + ICT+    NN   LC
Sbjct: 22  PAVNRRTSIICTIGPKSNNVETLC 45


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -2

Query: 327 YVNTLVDYRKWLY----IFPNTNVSVHYYCKDALVQVNTKVLPGVGVMFS 190
           + + ++DY  W Y    +   TN+   Y   D L+   T   PGVG M S
Sbjct: 326 WTDAIMDYLNWQYGPFSVENITNLEEPYLVGDVLILPITAFSPGVGHMGS 375


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 353 TLMSHMPYTTSLYRPINISISHTFEFIVAIGSVSGHKNSL*PVNSWQSCLKLS 511
           T+ S  P  +S + P+  S ++T +    + S SGH +S    N   S LKL+
Sbjct: 57  TITSDTPKVSSQHSPV--SSAYTGDSTTDLDSKSGHSSSQKLSNKVSSALKLT 107


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 156 HDVTITVDSRFYVSHSTTYWPKKKFNFNNYIDQNMLLEKATTA 28
           +D   T+++  Y     T++  KK N  NY+DQ+ ++   + A
Sbjct: 524 YDFLTTINATLY-----TFFTYKKLNTPNYVDQHAMIRTDSAA 561


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 718 KRTNCIYMLI*TRSLCLFTMPLLKS 644
           +++N +YML+ ++ +  F +PL+ S
Sbjct: 244 RKSNSVYMLVTSKDIIRFVIPLMAS 268


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 525 YVPVSDNFRQDCQEFT--GYNEFLCPETEPIATMNSKVCEIEMFMG 394
           Y+P S+    + ++     Y+ F  PET P+ ++ + +  +E+F G
Sbjct: 66  YIPRSEISADELKKLVDRSYSTFRHPETTPLKSLKNGLNVLELFHG 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,219
Number of Sequences: 5004
Number of extensions: 74139
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)