Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19b15
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1165 + 34630369-34630431,34630771-34630855,34631212-346313...    29   5.3  
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241...    28   9.3  

>02_05_1165 +
           34630369-34630431,34630771-34630855,34631212-34631332,
           34631588-34631831,34631922-34632026,34632110-34632154,
           34632243-34632395,34632481-34632762,34632844-34632980,
           34633065-34633152
          Length = 440

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 226 YKSFARRWCYVFDYGANVFDWNNA*CDHNCRF 131
           +  FA    ++F YG N+F W N   +HN  F
Sbjct: 89  FSMFALISLHIFLYGCNLFMWKNTRINHNFIF 120


>03_02_0701 -
           10523053-10523220,10523802-10523916,10524102-10524172,
           10524263-10524420,10524497-10524590,10524678-10524766,
           10525322-10525419,10525492-10525625,10525714-10525797,
           10525903-10526151
          Length = 419

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 331 SLREHFSRLPKMVVHFSKHERVRPLLL*RRACTS 230
           S +E  SR PK V+ + + E  +PL      C S
Sbjct: 312 SFQERVSRAPKQVLRYCREENAKPLWALSAGCPS 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,238,933
Number of Sequences: 37544
Number of extensions: 441245
Number of successful extensions: 933
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)