Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19b15
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical ...    30   2.1  
Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>AL021491-2|CAA16375.1|  319|Caenorhabditis elegans Hypothetical
           protein Y44A6B.3 protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 410 ISHTFEFIVAIGSVSGHKNSL*PVNSWQSCLKL 508
           I+   + ++  G +SG+  S   +NSW+ CLK+
Sbjct: 17  ITAELKLMIVYGQISGNTTSRFILNSWEDCLKI 49


>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -2

Query: 306 YRKWLYIFPNTNVSVHYYCKDALVQVNTKVLPGVGVMFSTMEQT 175
           Y+KW Y+F    +S      D     N   L G  + F+ +E+T
Sbjct: 322 YKKWCYMFGKVKISPKKGISDTNTTTNLTGLDGKKLTFTVIEET 365


>U37430-2|AAL08045.2|  802|Caenorhabditis elegans Hypothetical
           protein K09F5.6 protein.
          Length = 802

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/73 (30%), Positives = 36/73 (49%)
 Frame = +1

Query: 52  HILVDVVVKIKFLFRPVCS*MADIKSRIYSYGHIMRYSNRTRLLHSRKHNTNAGQNFCIN 231
           HI    V+   F+ R V + +A +   +YSYG+   Y+N   + H     T+ GQ    +
Sbjct: 298 HIYHPYVILGSFVVRLVMTTLAPMA--MYSYGYNKLYANVLNVQHRNAARTSQGQAEYGD 355

Query: 232 LYKRVFTIIVDGH 270
             +R +T  VDG+
Sbjct: 356 YRRRSYT-RVDGN 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,048,745
Number of Sequences: 27780
Number of extensions: 426343
Number of successful extensions: 1128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)