Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19b14
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    31   0.15 
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    31   0.20 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    30   0.35 
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    29   0.81 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    27   3.3  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    27   3.3  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   4.3  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    27   4.3  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   5.7  
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    26   5.7  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   7.6  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 23/84 (27%), Positives = 39/84 (46%)
 Frame = +1

Query: 514 LTP*SYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF 693
           L P + ++ R  LL   +L P  T  S++   +A   + N L  C+  K    ++L    
Sbjct: 731 LCPKNSSIIRHALLAKLVLFPENTADSLNEVLAA---YKNTLDLCSQDKRKQSSVLKINL 787

Query: 694 NRLFSSDSTDSLLCPKLGDASVKE 765
           ++LF+  S  SL   +LG   V +
Sbjct: 788 SKLFTLHSCLSLALQRLGYGDVSK 811


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 412 PLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMS 591
           P+  +   L  L+S  A  R   T L +  A G +   +   PR++L V    EP+ + S
Sbjct: 384 PMQKLQQQLQRLVSS-AKERPKATQLSLEGALGKIAVNTVRTPRQLLNVKRPTEPASSNS 442

Query: 592 SID--SGFS 612
           S++  SGFS
Sbjct: 443 SLNNFSGFS 451


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 245  ELPRFSCTPECSW-ICAIRAPLVRTAAPCWGRSSTQSCCRLRIATCHCPL 391
            ++ RFS     SW +   +AP V + + C   S ++SCC LR      P+
Sbjct: 1769 DIDRFSLKMLESWGLFENKAPFVNSTSICTAVSESRSCCHLRYLNGAAPV 1818


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 453 KVCG--AARHGHITRCAGRVWRFNSIVVYGAQKNAVSAHF 566
           K+CG  A  HGH  R   R+W F   + Y  +K  ++  F
Sbjct: 39  KICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEVF 78


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
 Frame = -1

Query: 815 FLLVLIYLYWTNALNLNSLTEASPSLGQ-SSESVESDENKRLNV-KLNNARVANLRIAHG 642
           F+LVL+   W +   L+     S S+G  SS ++ES ++  L V  + N+  A+  ++  
Sbjct: 8   FILVLLGFSWASPSALDDTFNVSRSVGLISSSNLESCQSSPLEVGNIYNSTSASEILSTL 67

Query: 641 DNKLSQM--YIAEKPLSIDDIVKE-GSNKVGTNSIFLGTVYDY 522
           D K   +   I     SI D++   G++    +S    TV +Y
Sbjct: 68  DAKYITIIGVIGSSNSSIQDLIDSVGNSNNAASSNPTSTVTEY 110


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +1

Query: 556 VPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF---NRLFSSDSTDS 726
           +P  L P   +S+I     +  +W+ +LS  +      R  ++FT     +  + DS  S
Sbjct: 318 LPISLNPDFLISNIHKVSESPRVWVTILSSLSRSCQKFRKKIAFTLFVGKQSKNDDSDFS 377

Query: 727 LLCPKLGDAS 756
            LC +L + S
Sbjct: 378 SLCQRLDEIS 387


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 593  DDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTR 468
            D I + G NK    S+ + T+ +    SPN+ +T+SN   T+
Sbjct: 891  DSIKRLGDNKFEDKSLRICTIPNSIFDSPNSHTTNSNSFFTK 932


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 321 PRVGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKH 431
           P + ++Q ++HAVD+ S   ++    +G   F  N H
Sbjct: 258 PEILLEQPYDHAVDWWSMGILIFDLLTGSPPFTANNH 294


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -1

Query: 437 KSMFI--VFKGITPTKTVEDNGMLRFEVDSMIVCLIDPN 327
           K+M+I  V + ITP   +++N M  +E + ++  + DPN
Sbjct: 156 KNMYIRSVTRVITPGTLIDENFMNPYESNYILTVVFDPN 194


>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -1

Query: 590 DIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKEFK 435
           D +KE + K   +S+F    ++Y    PNA+    N T      ++D++E +
Sbjct: 64  DSIKEKTEKTKLSSLFYAGKHEYFCVYPNASLIKQNSTT---EPSYDLQELR 112


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 514 LTP*SYTVPRKMLLVPTLLEPSLTMSSIDSG 606
           LTP    +P+ ++L+P L+   L  S+I SG
Sbjct: 673 LTPGQLVLPKNLVLLPILILAVLKSSAIRSG 703


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,446
Number of Sequences: 5004
Number of extensions: 69845
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)