Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19b13
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0094 - 14552970-14553182,14553275-14553679,14553780-145539... 35 0.045
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 34 0.079
01_02_0068 - 10803815-10804391,10804487-10804722,10804808-108049... 31 0.55
01_01_0586 - 4353919-4353973,4354623-4354940,4355043-4355323 30 1.3
04_04_1691 - 35393728-35394585 29 2.2
12_02_0635 - 21430245-21431156 28 3.9
09_02_0087 + 4132172-4132654 28 3.9
03_02_0458 + 8643804-8643904,8643994-8644091,8644206-8644504,864... 28 5.2
10_08_0591 + 19042704-19043063,19043171-19043311,19043592-190435... 27 6.8
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 27 6.8
07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305 27 6.8
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 27 9.0
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 27 9.0
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829... 27 9.0
>09_04_0094 -
14552970-14553182,14553275-14553679,14553780-14553902,
14554156-14554367,14554486-14554514,14554661-14555166
Length = 495
Score = 34.7 bits (76), Expect = 0.045
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 117 HQLRPLRLADVHLRQRALQLHQPGP---PVDEHAHGLASEEALVPPPVDAQL 263
H L P RL VH + L+L +P P A G +S A PPP DA L
Sbjct: 8 HHLLPPRLLSVHPQPPRLRLRRPLPRRAAASGAAAGTSSSTAAAPPPTDAAL 59
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 33.9 bits (74), Expect = 0.079
Identities = 21/39 (53%), Positives = 24/39 (61%)
Frame = +1
Query: 352 SLLSNVTRLEPGKNLISLGSSQSSMMTAVSP*NRISRGT 468
S L+NV RLE KNLI S++T VSP R SRGT
Sbjct: 607 SHLTNVRRLEQLKNLIDSKLDHQSLVTEVSP-RRRSRGT 644
>01_02_0068 -
10803815-10804391,10804487-10804722,10804808-10804978,
10805709-10805867
Length = 380
Score = 31.1 bits (67), Expect = 0.55
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 117 HQLRPLRLADVHLRQRALQLHQPGPPVDEHAHGLASEEALVPPPVDAQLP 266
HQ+ PL A H R + + PPV+E + ASE A+ P + + P
Sbjct: 9 HQVVPLLEASFHRRCSVKGVDEVSPPVEEMSPEAASEAAIEVPELMVKAP 58
>01_01_0586 - 4353919-4353973,4354623-4354940,4355043-4355323
Length = 217
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +3
Query: 93 HYEVDLAGHQLRPLRLADVHLRQRALQLHQPGPPVDEHAHGLASEEALVPPP 248
H+ + G+ PL L H A H P PP H HG A PPP
Sbjct: 38 HHHHGVLGYS--PLVLDHHHPTTAAASSHAPSPPTLHHHHG-GGLHAAAPPP 86
>04_04_1691 - 35393728-35394585
Length = 285
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 159 QRALQLHQPGPPVDEHAHGLASEEALVPPPVDAQLPGG---SPELYIE 293
Q L LH+P P + H G ++ L PPP A GG SP L +E
Sbjct: 170 QHQLHLHRPAPLL--HHPGYYDDQYLYPPPAAAAGGGGLLCSPALDME 215
>12_02_0635 - 21430245-21431156
Length = 303
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 165 ALQLHQPGPPVDEHAHG-LASEEALVPPPVDAQLP-GGSPELYI 290
A+ + QPGPP D G L + +V PP P G P L I
Sbjct: 242 AVVVEQPGPPTDHREAGELVMVDVVVRPPTTPPRPYVGCPRLTI 285
>09_02_0087 + 4132172-4132654
Length = 160
Score = 28.3 bits (60), Expect = 3.9
Identities = 21/73 (28%), Positives = 28/73 (38%)
Frame = +1
Query: 82 AFAFTMRLILPATSSVRFALPMXXXXXXXXXXXXXXXXXMSTPTGWPPKKHSYHRPLMHS 261
A AF +L AT+ R ALP+ + PT P +YH P++ S
Sbjct: 68 AAAFHTLPLLCATTRRRVALPLDVKGLQPHQVAIATQLPRALPTRHPTI--TYHHPILIS 125
Query: 262 SRVGAPNFISNTW 300
S P TW
Sbjct: 126 STSRRPTTTEKTW 138
>03_02_0458 +
8643804-8643904,8643994-8644091,8644206-8644504,
8645930-8646460
Length = 342
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 150 HLRQRALQLHQPGPPVDEHAHGLASEEALVPPPVDAQLPGGSP 278
HL+Q Q P PP + S +P PVD Q+P P
Sbjct: 8 HLQQPHPQAPPPPPPQQQQQPVPPSFRNALPVPVDGQIPAPLP 50
>10_08_0591 +
19042704-19043063,19043171-19043311,19043592-19043597,
19043652-19043747,19044618-19044698,19045210-19045296,
19045612-19045667,19045866-19045902
Length = 287
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 278 GAPTRELCINGRWYECFFGGQPVGVLIDGRPRLVQLEGPLPQVDIGK 138
G+P ++G W C+ V VL + RL PL Q+++G+
Sbjct: 131 GSPLDLAALDGTWRLCYTSASDVRVLFEAAERL-----PLLQIEVGQ 172
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -2
Query: 413 DDPREIKFXPGSRRVTXDN-KDSVVLSFNEESRQIEIDDQVFDIKFGAPTRELCINGRWY 237
++P+ GS +V N KD ++L ++S+ D +F + +E C+ G W+
Sbjct: 393 EEPQAYIDCTGSLQVWRINDKDKILLPSADQSKFYTGDCYIFQYMYPGDDKEECLIGSWF 452
>07_03_1643 + 28329090-28329125,28329260-28329335,28329413-28330305
Length = 334
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 183 PGPPVDEHAHGLASEEALVPPPVDAQLPGG 272
P PPV A E A PPP A P G
Sbjct: 77 PSPPVAAAAKQKPDEVAAAPPPAAAPAPAG 106
>08_02_0113 -
12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 509 YXEQDPVKTIQIDXVPREIRFYGDTAVIMLDWDDPREIKFXP 384
+ +Q+P + +I V ++ A + LD DD EI F P
Sbjct: 833 HIQQEPEVSSKIGSVAEDLGVLQSKAQLFLDGDDDEEIVFKP 874
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -2
Query: 419 DWDDPREIKFXPGSRRVTXDNKDSVVLSFN---EESRQIEIDD 300
D DDP ++ F P S +KD V S N EE ++E+ D
Sbjct: 218 DEDDPDDVDFEPESDTEKAADKDKFVDSENSDEEEDDELELSD 260
>07_01_0985 -
8297560-8297610,8297728-8297939,8298327-8298449,
8298763-8298817,8299940-8300077,8300187-8300261,
8300339-8300398,8301335-8301392,8301948-8302054,
8302484-8302558,8302643-8302838,8304222-8304301,
8308887-8309757,8310672-8310679
Length = 702
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -1
Query: 369 HVXQQRLGGPLVQRREQTNRNRRPSVRYKVRGSHP 265
H GGPL T R PSVRY + + P
Sbjct: 103 HAIVNDFGGPLQVEPSPTKRRCHPSVRYSIPCTPP 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,883,622
Number of Sequences: 37544
Number of extensions: 236038
Number of successful extensions: 972
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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