Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19b13
(519 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-1971|AAF58192.3| 1945|Drosophila melanogaster CG10228-P... 134 9e-32
AY069698-1|AAL39843.1| 479|Drosophila melanogaster LD46817p pro... 36 0.033
AE014298-1856|AAF48236.3| 506|Drosophila melanogaster CG12096-P... 36 0.033
BT001622-1|AAN71377.1| 635|Drosophila melanogaster RE36140p pro... 30 2.2
AY052043-1|AAK93467.1| 704|Drosophila melanogaster LP05645p pro... 30 2.2
AE014296-2468|AAF49669.1| 635|Drosophila melanogaster CG6945-PA... 30 2.2
AE014296-1543|AAF50352.1| 551|Drosophila melanogaster CG5735-PA... 30 2.2
AE014296-1542|AAN11975.1| 704|Drosophila melanogaster CG5735-PD... 30 2.2
AE014296-1541|AAF50351.1| 704|Drosophila melanogaster CG5735-PC... 30 2.2
AE014296-1540|AAF50350.1| 704|Drosophila melanogaster CG5735-PB... 30 2.2
AM282581-1|CAK54357.1| 1011|Drosophila melanogaster dSki protein... 28 6.6
U51858-1|AAC47133.1| 228|Drosophila melanogaster boule protein ... 28 8.7
DQ831954-1|ABJ09069.1| 1223|Drosophila melanogaster SnoN protein. 28 8.7
DQ831953-1|ABJ09068.1| 1223|Drosophila melanogaster SnoN protein. 28 8.7
DQ831952-1|ABJ09067.1| 1223|Drosophila melanogaster SnoN protein. 28 8.7
DQ138812-1|ABA86418.1| 866|Drosophila melanogaster CG7093 protein. 28 8.7
BT016112-1|AAV36997.1| 2062|Drosophila melanogaster LD13852p pro... 28 8.7
AY051704-1|AAK93128.1| 681|Drosophila melanogaster LD24550p pro... 28 8.7
AF024604-1|AAB82274.1| 1751|Drosophila melanogaster transcriptio... 28 8.7
AF024603-1|AAB82273.1| 1773|Drosophila melanogaster transcriptio... 28 8.7
AE014297-2470|AAF55518.1| 681|Drosophila melanogaster CG7156-PA... 28 8.7
AE014296-1587|AAN11986.1| 228|Drosophila melanogaster CG4760-PD... 28 8.7
AE014296-1586|AAF50317.3| 228|Drosophila melanogaster CG4760-PB... 28 8.7
AE014134-1364|AAF52579.2| 887|Drosophila melanogaster CG7093-PA... 28 8.7
AE013599-1527|AAM68625.1| 1751|Drosophila melanogaster CG8815-PD... 28 8.7
AE013599-1526|AAF58488.2| 1776|Drosophila melanogaster CG8815-PA... 28 8.7
AE013599-1525|AAM68624.1| 2062|Drosophila melanogaster CG8815-PC... 28 8.7
AE013599-1524|AAF58487.2| 2062|Drosophila melanogaster CG8815-PB... 28 8.7
>AE013599-1971|AAF58192.3| 1945|Drosophila melanogaster CG10228-PA
protein.
Length = 1945
Score = 134 bits (323), Expect = 9e-32
Identities = 63/142 (44%), Positives = 91/142 (64%)
Frame = -2
Query: 497 DPVKTIQIDXVPREIRFYGDTAVIMLDWDDPREIKFXPGSRRVTXDNKDSVVLSFNEESR 318
D V++I ID +EIRFY A+I +D D P EI F PG R + D+ + + L FN++ +
Sbjct: 1004 DVVRSITIDGGSKEIRFYNQVAIIFMDGDQPHEIGFQPGQRVIFIDHNEPLPLCFNDDYK 1063
Query: 317 QIEIDDQVFDIKFGAPTRELCINGRWYECFFGGQPVGVLIDGRPRLVQLEGPLPQVDIGK 138
+D Q+ I+FG P+REL I+ WYE +FGG V V I + +++ EGP P VDIG+
Sbjct: 1064 PFHLDGQLHRIRFGFPSRELYIDEHWYEIYFGGPAVSVPIGNKLHIIKAEGPPPNVDIGR 1123
Query: 137 AKRTELVAGKINLIVNANADVP 72
+R +LV GKIN+I +A+ VP
Sbjct: 1124 VRR-DLVVGKINMIADAHTIVP 1144
>AY069698-1|AAL39843.1| 479|Drosophila melanogaster LD46817p
protein.
Length = 479
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 341 LSFNEESRQIEIDDQVFDIKFGAPTRELCINGRWYECFFGGQPVGVLID 195
LS + + R + D ++D K T + I WYECF GG +++D
Sbjct: 330 LSAHIKKRLLNSLDVIYDFKTPPATEIINIGKNWYECFAGGAHANIIMD 378
>AE014298-1856|AAF48236.3| 506|Drosophila melanogaster CG12096-PA
protein.
Length = 506
Score = 35.9 bits (79), Expect = 0.033
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 341 LSFNEESRQIEIDDQVFDIKFGAPTRELCINGRWYECFFGGQPVGVLID 195
LS + + R + D ++D K T + I WYECF GG +++D
Sbjct: 357 LSAHIKKRLLNSLDVIYDFKTPPATEIINIGKNWYECFAGGAHANIIMD 405
>BT001622-1|AAN71377.1| 635|Drosophila melanogaster RE36140p
protein.
Length = 635
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 207 AHGLASEEALVPPPVDAQLPGGSPELYIE 293
AHG A + ALV PPV SPE+ IE
Sbjct: 563 AHGNAVQTALVSPPVTVATASLSPEIRIE 591
>AY052043-1|AAK93467.1| 704|Drosophila melanogaster LP05645p
protein.
Length = 704
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Frame = -2
Query: 497 DPVKTIQIDXVPREI----------RFYGDTAVIMLDWDDPREIKFXPGSRRVTXDNKDS 348
DP KT+ + VPR + R YG +D D E+K+ G+ RV N+ S
Sbjct: 552 DPRKTVFVGGVPRPLKAFELAMIMDRLYGGVCYAGIDTDP--ELKYPKGAGRVAFSNQQS 609
Query: 347 VVLSFNEESRQIEIDD 300
+ + + Q++ D
Sbjct: 610 YIAAISARFVQLQHGD 625
>AE014296-2468|AAF49669.1| 635|Drosophila melanogaster CG6945-PA
protein.
Length = 635
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 207 AHGLASEEALVPPPVDAQLPGGSPELYIE 293
AHG A + ALV PPV SPE+ IE
Sbjct: 563 AHGNAVQTALVSPPVTVATASLSPEIRIE 591
>AE014296-1543|AAF50352.1| 551|Drosophila melanogaster CG5735-PA,
isoform A protein.
Length = 551
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Frame = -2
Query: 497 DPVKTIQIDXVPREI----------RFYGDTAVIMLDWDDPREIKFXPGSRRVTXDNKDS 348
DP KT+ + VPR + R YG +D D E+K+ G+ RV N+ S
Sbjct: 399 DPRKTVFVGGVPRPLKAFELAMIMDRLYGGVCYAGIDTDP--ELKYPKGAGRVAFSNQQS 456
Query: 347 VVLSFNEESRQIEIDD 300
+ + + Q++ D
Sbjct: 457 YIAAISARFVQLQHGD 472
>AE014296-1542|AAN11975.1| 704|Drosophila melanogaster CG5735-PD,
isoform D protein.
Length = 704
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Frame = -2
Query: 497 DPVKTIQIDXVPREI----------RFYGDTAVIMLDWDDPREIKFXPGSRRVTXDNKDS 348
DP KT+ + VPR + R YG +D D E+K+ G+ RV N+ S
Sbjct: 552 DPRKTVFVGGVPRPLKAFELAMIMDRLYGGVCYAGIDTDP--ELKYPKGAGRVAFSNQQS 609
Query: 347 VVLSFNEESRQIEIDD 300
+ + + Q++ D
Sbjct: 610 YIAAISARFVQLQHGD 625
>AE014296-1541|AAF50351.1| 704|Drosophila melanogaster CG5735-PC,
isoform C protein.
Length = 704
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Frame = -2
Query: 497 DPVKTIQIDXVPREI----------RFYGDTAVIMLDWDDPREIKFXPGSRRVTXDNKDS 348
DP KT+ + VPR + R YG +D D E+K+ G+ RV N+ S
Sbjct: 552 DPRKTVFVGGVPRPLKAFELAMIMDRLYGGVCYAGIDTDP--ELKYPKGAGRVAFSNQQS 609
Query: 347 VVLSFNEESRQIEIDD 300
+ + + Q++ D
Sbjct: 610 YIAAISARFVQLQHGD 625
>AE014296-1540|AAF50350.1| 704|Drosophila melanogaster CG5735-PB,
isoform B protein.
Length = 704
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Frame = -2
Query: 497 DPVKTIQIDXVPREI----------RFYGDTAVIMLDWDDPREIKFXPGSRRVTXDNKDS 348
DP KT+ + VPR + R YG +D D E+K+ G+ RV N+ S
Sbjct: 552 DPRKTVFVGGVPRPLKAFELAMIMDRLYGGVCYAGIDTDP--ELKYPKGAGRVAFSNQQS 609
Query: 347 VVLSFNEESRQIEIDD 300
+ + + Q++ D
Sbjct: 610 YIAAISARFVQLQHGD 625
>AM282581-1|CAK54357.1| 1011|Drosophila melanogaster dSki protein
long isoform protein.
Length = 1011
Score = 28.3 bits (60), Expect = 6.6
Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 19/142 (13%)
Frame = +3
Query: 87 RVHYEVDLAGHQLRPLRLADVHLRQRALQLHQ-------------PGPPVD--EHAHGLA 221
RV Y++ L QL+ + L ++H QR L+ + GP + H HGL
Sbjct: 296 RVKYQIIL--DQLKEVELKEMHKAQRELEHKKRKAEMLMDDGMLGSGPVLGLAGHPHGLV 353
Query: 222 SEEALVPPPVDAQ----LPGGSPELYIEHLVVYFYLSALFVEREDHRVFVVXRDASRARX 389
A PPP Q +P G +L + SAL + + V ++ R R
Sbjct: 354 GALAPPPPPPMKQPQMDIPSGKKQLQ-QLKGATVAASALEYQYQVMYAHCVQKERERERE 412
Query: 390 ELDLPGVVPVQHDDRRVAVEPY 455
L +P QH VA PY
Sbjct: 413 HLPHSHPLPRQHRAVLVATTPY 434
>U51858-1|AAC47133.1| 228|Drosophila melanogaster boule protein
protein.
Length = 228
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 199 MSTPTGWPPKKHSYHRPLMHS 261
M+ PT WP H PL+HS
Sbjct: 177 MNVPTIWPQNYQENHSPLLHS 197
>DQ831954-1|ABJ09069.1| 1223|Drosophila melanogaster SnoN protein.
Length = 1223
Score = 27.9 bits (59), Expect = 8.7
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +3
Query: 204 HAHGLASEEALVPPPVDAQ----LPGGSPELYIEHLVVYFYLSALFVEREDHRVFVVXRD 371
H HGL A PPP Q +P G +L + SAL + + V ++
Sbjct: 355 HPHGLVGALAPPPPPPMKQPQMDIPSGKKQLQ-QLKGATVAASALEYQYQVMYAHCVQKE 413
Query: 372 ASRARXELDLPGVVPVQHDDRRVAVEPY 455
R R L +P QH VA PY
Sbjct: 414 REREREHLPHSHPLPRQHRAVLVATTPY 441
>DQ831953-1|ABJ09068.1| 1223|Drosophila melanogaster SnoN protein.
Length = 1223
Score = 27.9 bits (59), Expect = 8.7
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +3
Query: 204 HAHGLASEEALVPPPVDAQ----LPGGSPELYIEHLVVYFYLSALFVEREDHRVFVVXRD 371
H HGL A PPP Q +P G +L + SAL + + V ++
Sbjct: 355 HPHGLVGALAPPPPPPMKQPQMDIPSGKKQLQ-QLKGATVAASALEYQYQVMYAHCVQKE 413
Query: 372 ASRARXELDLPGVVPVQHDDRRVAVEPY 455
R R L +P QH VA PY
Sbjct: 414 REREREHLPHSHPLPRQHRAVLVATTPY 441
>DQ831952-1|ABJ09067.1| 1223|Drosophila melanogaster SnoN protein.
Length = 1223
Score = 27.9 bits (59), Expect = 8.7
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +3
Query: 204 HAHGLASEEALVPPPVDAQ----LPGGSPELYIEHLVVYFYLSALFVEREDHRVFVVXRD 371
H HGL A PPP Q +P G +L + SAL + + V ++
Sbjct: 355 HPHGLVGALAPPPPPPMKQPQMDIPSGKKQLQ-QLKGATVAASALEYQYQVMYAHCVQKE 413
Query: 372 ASRARXELDLPGVVPVQHDDRRVAVEPY 455
R R L +P QH VA PY
Sbjct: 414 REREREHLPHSHPLPRQHRAVLVATTPY 441
>DQ138812-1|ABA86418.1| 866|Drosophila melanogaster CG7093 protein.
Length = 866
Score = 27.9 bits (59), Expect = 8.7
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +3
Query: 204 HAHGLASEEALVPPPVDAQ----LPGGSPELYIEHLVVYFYLSALFVEREDHRVFVVXRD 371
H HGL A PPP Q +P G +L + SAL + + V ++
Sbjct: 5 HPHGLVGALAPPPPPPMKQPQMDIPSGKKQLQ-QLKGATVAASALEYQYQVMYAHCVQKE 63
Query: 372 ASRARXELDLPGVVPVQHDDRRVAVEPY 455
R R L +P QH VA PY
Sbjct: 64 REREREHLPHSHPLPRQHRAVLVATTPY 91
>BT016112-1|AAV36997.1| 2062|Drosophila melanogaster LD13852p protein.
Length = 2062
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = -2
Query: 245 RWYECFFG---GQPVGVLIDGRP 186
RW+ F G GQP G LIDG P
Sbjct: 974 RWFTDFLGPPSGQPAGGLIDGMP 996
>AY051704-1|AAK93128.1| 681|Drosophila melanogaster LD24550p
protein.
Length = 681
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 315 LSALFVEREDHRVFVVXRDASRARXELDLPGVVPVQHD 428
L+ L V + H V + R+ SR L LPG +PV D
Sbjct: 42 LTCLVVWKRFHDVKRLHRELSRRHKSLQLPGKLPVPTD 79
>AF024604-1|AAB82274.1| 1751|Drosophila melanogaster transcriptional
co-repressor SIN3A protein.
Length = 1751
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = -2
Query: 245 RWYECFFG---GQPVGVLIDGRP 186
RW+ F G GQP G LIDG P
Sbjct: 971 RWFTDFLGPPSGQPAGGLIDGMP 993
>AF024603-1|AAB82273.1| 1773|Drosophila melanogaster transcriptional
co-repressor SIN3A protein.
Length = 1773
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = -2
Query: 245 RWYECFFG---GQPVGVLIDGRP 186
RW+ F G GQP G LIDG P
Sbjct: 971 RWFTDFLGPPSGQPAGGLIDGMP 993
>AE014297-2470|AAF55518.1| 681|Drosophila melanogaster CG7156-PA,
isoform A protein.
Length = 681
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 315 LSALFVEREDHRVFVVXRDASRARXELDLPGVVPVQHD 428
L+ L V + H V + R+ SR L LPG +PV D
Sbjct: 42 LTCLVVWKRFHDVKRLHRELSRRHKSLQLPGKLPVPTD 79
>AE014296-1587|AAN11986.1| 228|Drosophila melanogaster CG4760-PD,
isoform D protein.
Length = 228
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 199 MSTPTGWPPKKHSYHRPLMHS 261
M+ PT WP H PL+HS
Sbjct: 177 MNVPTIWPQNYQENHSPLLHS 197
>AE014296-1586|AAF50317.3| 228|Drosophila melanogaster CG4760-PB,
isoform B protein.
Length = 228
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 199 MSTPTGWPPKKHSYHRPLMHS 261
M+ PT WP H PL+HS
Sbjct: 177 MNVPTIWPQNYQENHSPLLHS 197
>AE014134-1364|AAF52579.2| 887|Drosophila melanogaster CG7093-PA
protein.
Length = 887
Score = 27.9 bits (59), Expect = 8.7
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Frame = +3
Query: 204 HAHGLASEEALVPPPVDAQ----LPGGSPELYIEHLVVYFYLSALFVEREDHRVFVVXRD 371
H HGL A PPP Q +P G +L + SAL + + V ++
Sbjct: 19 HPHGLVGALAPPPPPPMKQPQMDIPSGKKQLQ-QLKGATVAASALEYQYQVMYAHCVQKE 77
Query: 372 ASRARXELDLPGVVPVQHDDRRVAVEPY 455
R R L +P QH VA PY
Sbjct: 78 REREREHLPHSHPLPRQHRAVLVATTPY 105
>AE013599-1527|AAM68625.1| 1751|Drosophila melanogaster CG8815-PD,
isoform D protein.
Length = 1751
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = -2
Query: 245 RWYECFFG---GQPVGVLIDGRP 186
RW+ F G GQP G LIDG P
Sbjct: 974 RWFTDFLGPPSGQPAGGLIDGMP 996
>AE013599-1526|AAF58488.2| 1776|Drosophila melanogaster CG8815-PA,
isoform A protein.
Length = 1776
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = -2
Query: 245 RWYECFFG---GQPVGVLIDGRP 186
RW+ F G GQP G LIDG P
Sbjct: 974 RWFTDFLGPPSGQPAGGLIDGMP 996
>AE013599-1525|AAM68624.1| 2062|Drosophila melanogaster CG8815-PC,
isoform C protein.
Length = 2062
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = -2
Query: 245 RWYECFFG---GQPVGVLIDGRP 186
RW+ F G GQP G LIDG P
Sbjct: 974 RWFTDFLGPPSGQPAGGLIDGMP 996
>AE013599-1524|AAF58487.2| 2062|Drosophila melanogaster CG8815-PB,
isoform B protein.
Length = 2062
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = -2
Query: 245 RWYECFFG---GQPVGVLIDGRP 186
RW+ F G GQP G LIDG P
Sbjct: 974 RWFTDFLGPPSGQPAGGLIDGMP 996
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,242,575
Number of Sequences: 53049
Number of extensions: 378255
Number of successful extensions: 1564
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1908489216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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