Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19b13
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    58   4e-09
AC024800-6|AAF60726.1|  416|Caenorhabditis elegans Hypothetical ...    29   2.6  
U55370-5|AAA97996.1|  176|Caenorhabditis elegans Taf (tbp-associ...    27   8.0  

>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 41/113 (36%), Positives = 57/113 (50%)
 Frame = -2

Query: 482 IQIDXVPREIRFYGDTAVIMLDWDDPREIKFXPGSRRVTXDNKDSVVLSFNEESRQIEID 303
           I +D    E+ F  DTAVI      P  I F    R +  D    + L F+  + QI+I 
Sbjct: 414 IFVDGKAYEVMFVDDTAVIERG-GAPHRIYFAGPPRNLVIDGIPHL-LQFDTPT-QIDIL 470

Query: 302 DQVFDIKFGAPTRELCINGRWYECFFGGQPVGVLIDGRPRLVQLEGPLPQVDI 144
                +KFGAP+REL I G  ++  FGG P+   I+GR   ++L G  P+V I
Sbjct: 471 GSKHMVKFGAPSRELYIGGHPFKGQFGGPPIIATINGRRHEIRLTGSAPEVRI 523



 Score = 36.7 bits (81), Expect = 0.010
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = -2

Query: 323 SRQIEIDDQVFDIKFGAPTRELCINGRWYECFFGGQPVGVLIDGRPRLVQLEGPLPQVDI 144
           + +I +D + +++ F   T  +   G  +  +F G P  ++IDG P L+Q + P  Q+DI
Sbjct: 411 NNRIFVDGKAYEVMFVDDTAVIERGGAPHRIYFAGPPRNLVIDGIPHLLQFDTP-TQIDI 469



 Score = 32.7 bits (71), Expect = 0.16
 Identities = 28/104 (26%), Positives = 42/104 (40%)
 Frame = -2

Query: 497 DPVKTIQIDXVPREIRFYGDTAVIMLDWDDPREIKFXPGSRRVTXDNKDSVVLSFNEESR 318
           D    I+    P  I F G    +++D   P  ++F   ++     +K  V   F   SR
Sbjct: 427 DDTAVIERGGAPHRIYFAGPPRNLVID-GIPHLLQFDTPTQIDILGSKHMV--KFGAPSR 483

Query: 317 QIEIDDQVFDIKFGAPTRELCINGRWYECFFGGQPVGVLIDGRP 186
           ++ I    F  +FG P     INGR +E    G    V I+  P
Sbjct: 484 ELYIGGHPFKGQFGGPPIIATINGRRHEIRLTGSAPEVRIEPEP 527


>AC024800-6|AAF60726.1|  416|Caenorhabditis elegans Hypothetical
           protein Y49F6A.5 protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 252 DAQLPGGSPELYIEHLVVYFYLSALFVE 335
           DA+ PG  P++  +HL+   YL  L  E
Sbjct: 348 DAEYPGEGPDMISQHLLFQLYLKQLLFE 375


>U55370-5|AAA97996.1|  176|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 10,
           isoform a protein.
          Length = 176

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 198 DEHAHGLASEEALVPPPVDAQLPGGSPELY 287
           +++    ++E  L+PPP   Q P  +P++Y
Sbjct: 5   EQYEPSSSTESVLMPPPALPQRPAAAPQVY 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,497,152
Number of Sequences: 27780
Number of extensions: 184509
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)