Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19b12
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    92   7e-20
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         27   2.9  

>SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 704

 Score = 92.3 bits (219), Expect = 7e-20
 Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 1/180 (0%)
 Frame = -1

Query: 757  VDEYCLSSLPEYDGHKFQNIAKEIFDLEEGDRAKEKLEAYKKQYEPXTRWLGDKLGSWIT 578
            +DEY ++ L E++G K  NI K+  +LEE D  K   E  +K+YE   + L   LG  + 
Sbjct: 500  IDEYAVTQLKEFEGKKLVNITKDGLELEETDEEKAAREKLEKEYEEFAKQLKTILGDKVE 559

Query: 577  RATVXXXXXXXXXXXXXXAFGWTGNMERLALSNAHQKADDPQRRHHLTQKKMLEINPRHP 398
            +  V               +GW+ NMER+  + A +   D     +++ +K  EINP+ P
Sbjct: 560  KVVVSNKIVGSPCLLTTGQYGWSANMERIMKAQALR---DTSMSAYMSSRKTFEINPKSP 616

Query: 397  IVAELLRRVQXXXXXXXXXXXAHT-LYRTAALRSGYVLQEGQAVLFADSVETMLQRTLGL 221
            I+AEL ++V+             T LY TA L SG+ L +  A  +A  +  ++  +LGL
Sbjct: 617  IIAELKKKVEENGAEDRSVKDLATILYETALLSSGFTLDDPSA--YAQRINRLI--SLGL 672


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 631 QYEPXTRWLGDKLGSWITRAT 569
           Q E   RWLG +LG W+   T
Sbjct: 289 QTEKGVRWLGKRLGEWLLDIT 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,255,082
Number of Sequences: 5004
Number of extensions: 13807
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)