Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19b10
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    32   0.094
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    31   0.22 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    29   0.88 

>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 583 ESCLLLQRTCRQDRNLAQSDVNICSRDPLLAND-SPLLTNMC 461
           E   L  +TC   R+L Q   NI   DPL+ ND  P L  +C
Sbjct: 258 EERFLFTKTCNVFRSLIQIQKNIMKEDPLIRNDYEPQLLPIC 299


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 827 SQTKLPRDQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRLSFVYRRHISTRY 651
           S T   +D R+ A   S+  +  P      +  E +RS H  G  R    YR H+S  +
Sbjct: 108 SSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHH 166


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 880 MDNVPDFHYHTKQTRSNAVRQNFPETNVRTP 788
           MD++ DF+++ K T SN  + N+   N RTP
Sbjct: 1   MDDLLDFNFYDKSTPSN--QNNYSNNNSRTP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,624
Number of Sequences: 5004
Number of extensions: 67116
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)