Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19b06
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    29   0.64 
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    28   1.5  
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    28   2.0  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   3.4  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    26   7.9  

>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 13/127 (10%)
 Frame = +1

Query: 133 VIDLKKFTFLSLKYLITIFGDLGILLSDR*L*MSKTNLFSIKRFFKL*STIALCEF*TKS 312
           VID+     +S  Y + ++ D  +LL      ++  +L  I   F L    A C F   S
Sbjct: 203 VIDVVPADCISSNYALYVYSDAVVLLESHEKFIASYSLAEITSVFVLADGTA-CIFTLSS 261

Query: 313 E---RSSRTVEPSLIMISK*----PSKSASRIECAT*SLLPYDHK------TKTQPISCN 453
               +  ++ EP   +ISK     P KS + ++    SL  Y  K      T+    SCN
Sbjct: 262 STLLKLHQSPEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTEGTVDSCN 321

Query: 454 SCKLSYT 474
            CKLS T
Sbjct: 322 LCKLSNT 328


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
 Frame = -1

Query: 209 NNIPKSPKIVIKYLSDKNVNF-------FKSITLVDDLPTNNYAYDFYVKVKXMPHPCAR 51
           NN+  SP  +IK++ DK+ +F         +++  +D PT   A    V++  +   C +
Sbjct: 603 NNLSLSPYCLIKFIGDKDSDFENTRLHIVLALSDTEDTPTRLAACGILVQITSVDEGCKK 662

Query: 50  LAQLSRTDN 24
           +  L    N
Sbjct: 663 ILSLQNDFN 671


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = -3

Query: 729 ARRQHVRHQAQY*TRIQNASVGPHVCA*QQTANVF-VS*RMVSVATLQSGLSQKRIFDVG 553
           ARRQ  R QA++  R  + S+G +  + Q ++N+F  S R   +       ++K ++D  
Sbjct: 173 ARRQATRLQAKHLRRATSGSLGYNPYSLQNSSNIFSTSSRKGDLPKFSDYSAEKPMYDTI 232

Query: 552 ISARGRVRFGQHSHNRRGANSNSR 481
               G  R G  S  +   +++SR
Sbjct: 233 SEDDGLKRGGSVSKLKPTFSNDSR 256


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = -1

Query: 407 RDHVAHSMRDADLEGYFDIIISEGSTVREERSDLVQNSHNAIVDYNLKKRFIENKFVFDI 228
           R  +   M +  LEG   + + +G++   E+   VQ SH  +V       +   K    +
Sbjct: 75  RQRLQQLMIEKSLEGDNPLDVDQGASENIEKETYVQGSHELLVARKKIALYSLEKAKLRL 134

Query: 227 HNHRSDNNIPKSPKIVI 177
              R  + IP  P+IV+
Sbjct: 135 KKEREISEIP-VPEIVL 150


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 534 HDHVRKSPRQRFAFERDHFVVWQQKPFFKK 623
           H HVR+ P      E D F  W  + +++K
Sbjct: 267 HIHVRRFPISEIPTEEDQFTDWLYQRWYEK 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,657,217
Number of Sequences: 5004
Number of extensions: 80725
Number of successful extensions: 235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)