Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a20
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    31   0.17 
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    28   1.2  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    27   1.6  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    25   6.3  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   6.3  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    25   8.3  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   8.3  

>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
 Frame = -3

Query: 448 KQWLKDQVLAAHEPVHVEEYWRERTNPIR---RFYRKPLDVLFAKLTPMLGEQRAAHYRY 278
           K W+   V  A + V  +  +     PI    RF +   +VLF     +L E R A  + 
Sbjct: 46  KPWILPAVKKASKIVEEQASFNHEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQS 105

Query: 277 ISGK-LGLIAVAMLSTHYYFKYLG-NDWTKKGGWKVLKT 167
           +SG     +A + + T +Y K+ G + +     W V +T
Sbjct: 106 VSGTGANFLAASFIET-FYVKHTGAHVYISNPTWPVHRT 143


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = -3

Query: 286 YRYISGKLGLIAVAMLSTHYYFKYLGNDWTKKGGWKVLKTKPMVLPGQPGFPFKSEKTDS 107
           Y+ ++  LG + VA +S  +Y      +W  K  W ++     +L  QP        T +
Sbjct: 201 YQNLANSLGKLYVAPVSPWFYTHLSYKNWAYKSDWLIIDRWNEMLSVQP--DMIEVLTWN 258

Query: 106 DYAERKFKSSV 74
           DY E  +  ++
Sbjct: 259 DYGESHYIGNI 269


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 156 FFLDNLDSHSNLRKPILITLKGNSRALLFK 67
           FF+D+LDSH N    IL +L   S   + +
Sbjct: 311 FFIDSLDSHPNNPTGILYSLDSESNTFVIR 340


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 378 VLILFVVFTGNPWTYSLRNLPQCWENNVLHI 286
           VL LF+ F    W Y L ++P+ W+    +I
Sbjct: 257 VLWLFLSFLLALWIYYLTDIPRLWQMREFYI 287


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 294 LHIIDIYLENLV*SLWLCYQHITTLNI*ETTGQRRVVGKY*KPNQWFFLD-NLDSHSNLR 118
           + I ++  + LV +L    + +++L++  ++G   ++G Y K   WF LD +   + NLR
Sbjct: 592 VRIYNLVKQELVKTLLTGVKWVSSLSV-HSSGDHVIIGSYDKRLCWFDLDFSSKPYKNLR 650


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 50  LSIKLFLNNRALEFPFSVIRIGFLRFEWESRLSRKNH 160
           L+  +FL N           I FLRFE E  L+ KN+
Sbjct: 447 LARNMFLQNAPALLDCRHFWISFLRFELEQPLNSKNY 483


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 136  IQVVQEEPLVWFLVLSN 186
            I++VQ+EP  W+L L N
Sbjct: 1133 IEIVQKEPSGWWLALKN 1149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,149
Number of Sequences: 5004
Number of extensions: 58562
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)