Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19a19
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 101 2e-22
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 50 3e-07
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 49 7e-07
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 3e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.017
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.017
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.36
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.48
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.84
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 4.5
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 5.9
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 26 5.9
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 26 5.9
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces... 26 7.8
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 7.8
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 7.8
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 101 bits (241), Expect = 2e-22
Identities = 48/114 (42%), Positives = 62/114 (54%), Gaps = 13/114 (11%)
Frame = -1
Query: 835 CNRTGHFARDCKE--EADRCYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNCPE 671
CN+TGH A +C E + CY C GH+ R+C SP+ CY C + GHIAR+C
Sbjct: 41 CNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRT 100
Query: 670 GGRES--------ATQTCYNCNKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 533
G++S + CY C GH +R+C G K CY CGK GH S EC +A
Sbjct: 101 NGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSCGKIGHRSFECQQA 153
Score = 93.5 bits (222), Expect = 3e-20
Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Frame = -1
Query: 835 CNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRES 656
C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+CP
Sbjct: 22 CGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPR 80
Query: 655 ATQTCYNCNKSGHISRNC-PDGTKT------------CYVCGKPGHISREC 542
CY C + GHI+R+C +G ++ CY CG GH +R+C
Sbjct: 81 QGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 88.6 bits (210), Expect = 1e-18
Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Frame = -1
Query: 787 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 608
RCY C GH AREC + CYNCN+TGH A C E +E +TCY C +GH+ R
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQE---KTCYACGTAGHLVR 71
Query: 607 NCPDGTK-----TCYVCGKPGHISREC 542
+CP CY CG+ GHI+R+C
Sbjct: 72 DCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 74.1 bits (174), Expect = 2e-14
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = -1
Query: 724 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCYVCGKPGHIS 551
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 550 RECDEARN 527
R+C + N
Sbjct: 71 RDCPSSPN 78
Score = 68.5 bits (160), Expect = 1e-12
Identities = 35/92 (38%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Frame = -1
Query: 838 KCNRTGHFARDCKEEADR-------------CYRCNGTGHIARECAQSPDEPSCYNCNKT 698
KC R GH ARDC+ + CY C GH AR+C CY+C K
Sbjct: 87 KCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---KCYSCGKI 143
Query: 697 GHIARNCPEGGRESATQTCYNCNKSGHISRNC 602
GH + C + S Q CY CN+ GHI+ NC
Sbjct: 144 GHRSFECQQA---SDGQLCYKCNQPGHIAVNC 172
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -1
Query: 718 CYNCNKTGHIARNCPEGGRESATQTCYNCNK-SGHISRNCPDGTKTCYVCGKPGHISREC 542
C+NC GHI+++CP C C HIS CP TK C CG GHI+ C
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140
Query: 541 DEAR 530
E R
Sbjct: 141 SEPR 144
Score = 49.6 bits (113), Expect = 6e-07
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Frame = -1
Query: 832 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNK-TGHIARNCPEGGRES 656
+R +F D E+ C+ C G GHI+++C C C HI+ CP
Sbjct: 74 SRGRYFGSD-PSESIVCHNCKGNGHISKDC----PHVLCTTCGAIDDHISVRCP------ 122
Query: 655 ATQTCYNCNKSGHISRNCPD----GTKTCYVCGKPGHISREC 542
T+ C NC GHI+ C + G + C C H S C
Sbjct: 123 WTKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 49.2 bits (112), Expect = 7e-07
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = -1
Query: 856 NVRSASKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 677
N S+S+ N F K +R + R Q + C+ C + GHI ++C
Sbjct: 34 NEESSSQDNMKASFGSS-KRYDERQKKKRSEYRRLRRINQRNRDKFCFACRQQGHIVQDC 92
Query: 676 PEGGRESATQTCYNCNKSGHISRNC----PDGTKTCYVCGKPGHISRECDE 536
PE + C+ C H C P C++C + GH+S +C++
Sbjct: 93 PEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQ 141
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Frame = -1
Query: 856 NVRSASKCNRTGHFARDCKEEAD----RCYRCNGTGHIARECAQSPD--EPS---CYNCN 704
NV +C H C ++ +C+ C+ GH++ +C Q+P P C C+
Sbjct: 98 NVSICFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPKGLYPKGGCCKFCS 157
Query: 703 KTGHIARNCPEGGRESAT 650
H+A++C + ++ +
Sbjct: 158 SVHHLAKDCDQVNKDDVS 175
Score = 28.7 bits (61), Expect = 1.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 589 KTCYVCGKPGHISRECDEARN 527
K C+ C + GHI ++C EA++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 3e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 718 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 599
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 39.5 bits (88), Expect = 6e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = -1
Query: 664 RESATQTCYNCNKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEARN*PQPP 512
R+ Q C NC GH +CP+ C CG GHI+R+C R+ QPP
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC-PVRD-QQPP 357
Score = 33.5 bits (73), Expect = 0.039
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Frame = -1
Query: 835 CNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 722
C GH DC E + C C GHIAR+C +P
Sbjct: 314 CGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.017
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 619 HISRNCPDGTKTCYVCGKPGHISREC 542
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -1
Query: 820 HFARDCKEEADRCYRCNGTGHIAREC 743
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.017
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -1
Query: 619 HISRNCPDGTKTCYVCGKPGHISREC 542
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 3.4
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -1
Query: 820 HFARDCKEEADRCYRCNGTGHIAREC 743
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.36
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = -1
Query: 682 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 572
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.48
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -1
Query: 739 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN-KSGHISRNCPDGTKTCYVCG 569
++ ++P+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 29.1 bits (62), Expect = 0.84
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 667 GRESATQTCYNCNKSGHISRNCPDGTKTCYVCGKP 563
GR+ T+ C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 739 QSPDEPSCYNCNKTGHIARN--CPEGGR 662
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 4.5
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +1
Query: 634 SYSRSASQTPAPPRDSSVRCGPSCCSCNTTARPGSVRTRALCA-----PCRYICSNGQPL 798
S S ++S TP P SS+ P+ S TTA+ ++ LC Y C N Q
Sbjct: 843 SSSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGMQ---LCGSNYYDASSYYCDNDQLC 899
Query: 799 P 801
P
Sbjct: 900 P 900
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = -1
Query: 751 RECAQSPDEPS-----CYNCNKTGHIARNCP 674
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 643 CYNCNKSGHISRNCPDGTKTCYVCGKP 563
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
Mde5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 26.2 bits (55), Expect = 5.9
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1
Query: 793 PLPCNPSQSVLCGCTWK 843
P PCNP CG W+
Sbjct: 49 PKPCNPEDREYCGGNWR 65
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 159 HGTPASNLSFDKKICTKYIKYILCNAKNCNATPSIVQ 269
HG P S +S K+C + + N +N A PS+V+
Sbjct: 210 HGQPESTMSRKPKLCVQ--SKSMTNIRNSVAKPSLVR 244
>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 799 PCNPSQSVLCGCTWK 843
PC+P + CG TWK
Sbjct: 50 PCDPDANQYCGGTWK 64
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 358 YKSTVEPHSSVCGADAALHLYCNRLSCVARGVL 456
Y +T EP ++ GA+ L + R +A+G+L
Sbjct: 50 YDNTWEPEQNLFGAEKVLKKWKKRKKLIAKGLL 82
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 319 KNKHERASTRPSIYKSTVEPHSS 387
K+KH S+ YK+ VEPH S
Sbjct: 16 KSKHASKSSLKEKYKNEVEPHRS 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,490
Number of Sequences: 5004
Number of extensions: 62537
Number of successful extensions: 244
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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