Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a15
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.91 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   3.7  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = +2

Query: 533  SRKFTMKAVQLKTQMATNSGKFNTSTRELHKTFLKVYKR*TAVNIVSMSAIKKMTCFSLS 712
            S   T   V   +   T+S   NTST     + L      T+ +IV+ S    +T  S+ 
Sbjct: 3141 STPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSSIVNSST--PITSSSVL 3198

Query: 713  SGSIPVTT*AELSTSSP 763
            + S P+T+   L+TS+P
Sbjct: 3199 NSSTPITSSTTLNTSTP 3215



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +2

Query: 533 SRKFTMKAVQLKTQMATNSGKFNTSTRELHKTFLKVYKR*TAVNIVSMSAIKKMTCFSLS 712
           S   T   V   +   T+S   N+ST     T L      T+ ++++ S    +T  S+ 
Sbjct: 597 STPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSST--PITSSSVL 654

Query: 713 SGSIPVTT*AELSTSSP 763
           + S P+T+   L+TS+P
Sbjct: 655 NSSTPITSSTALNTSTP 671



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +2

Query: 533  SRKFTMKAVQLKTQMATNSGKFNTSTRELHKTFLKVYKR*TAVNIVSMSAIKKMTCFSLS 712
            S   T   V   +   T+S   N+ST     T +      T+  +V+ S    +T  S+ 
Sbjct: 801  STPITSSTVLNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSST--PITSSSVL 858

Query: 713  SGSIPVTT*AELSTSSP 763
            + S P+T+   L+TS+P
Sbjct: 859  NSSTPITSSTALNTSTP 875



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +2

Query: 533  SRKFTMKAVQLKTQMATNSGKFNTSTRELHKTFLKVYKR*TAVNIVSMSAIKKMTCFSLS 712
            S   T   V   +   T+S   N+ST     + L      T+  +V+ S    +T  S+ 
Sbjct: 2409 STPITSSTVVNTSTSITSSSVLNSSTPITSSSVLNSSTPITSSTVVNSST--PITSSSVL 2466

Query: 713  SGSIPVTT*AELSTSSP 763
            + S P+T+   L+TS+P
Sbjct: 2467 NSSTPITSSTALNTSTP 2483



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +2

Query: 533  SRKFTMKAVQLKTQMATNSGKFNTSTRELHKTFLKVYKR*TAVNIVSMSAIKKMTCFSLS 712
            S   T  +V   +   T+S   NTST     T +      T+  +++ S    +T  S+ 
Sbjct: 2781 STPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSST--PITSSSVL 2838

Query: 713  SGSIPVTT*AELSTSSP 763
            + S P+T+   L+TS+P
Sbjct: 2839 NSSTPITSSTALNTSTP 2855



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +2

Query: 581  TNSGKFNTSTRELHKTFLKVYKR*TAVNIVSMSAIKKMTCFSLSSGSIPVTT*AELSTSS 760
            T+S   N+ST     T L      T+ ++++ S    +T  S+ + S PVT+ + L++S+
Sbjct: 3313 TSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTA--ITSSSILNSSTPVTSSSVLNSST 3370

Query: 761  P 763
            P
Sbjct: 3371 P 3371



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +2

Query: 533  SRKFTMKAVQLKTQMATNSGKFNTSTRELHKTFLKVYKR*TAVNIVSMSAIKKMTCFSLS 712
            S   T   V   +   T+S   N+ST     + L      T+  +V+ S    +T  S+ 
Sbjct: 1521 STPITSSTVLNTSTPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTST--PITSSSVV 1578

Query: 713  SGSIPVTT*AELSTSSP 763
            + S P+T+   L+TS+P
Sbjct: 1579 NSSTPITSSTALNTSTP 1595



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +2

Query: 533 SRKFTMKAVQLKTQMATNSGKFNTSTRELHKTFLKVYKR*TAVNIVSMSAIKKMTCFSLS 712
           S   T  +V   +   T+S   NTST     + L      T+  +++ S    +T  S+ 
Sbjct: 561 STPITSSSVLNSSTPITSSTVVNTSTPITRYSVLNSSTPITSSTVLNSST--PITSSSVL 618

Query: 713 SGSIPVTT*AELSTSSP 763
           + S P+T+   L+TS+P
Sbjct: 619 NSSTPITSSTALNTSTP 635



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +2

Query: 533 SRKFTMKAVQLKTQMATNSGKFNTSTRELHKTFLKVYKR*TAVNIVSMSAIKKMTCFSLS 712
           S   T  +V   +   T+S   NTST     + L      T+   ++ S    +T  S+ 
Sbjct: 669 STPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTAITSSTALNTST--PITSSSVL 726

Query: 713 SGSIPVTT*AELSTSSP 763
           + S P+T+   L+TS+P
Sbjct: 727 NSSTPITSSTALNTSTP 743



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 581  TNSGKFNTSTRELHKTFLKVYKR*TAVNIVSMSAIKKMTCFSLSSGSIPVTT*AELSTSS 760
            T+S   N+ST     + L      T+  +V+ S    +T  S+ + S P+T+   L+TS+
Sbjct: 1921 TSSSVLNSSTPITSSSVLNSSTPITSSTVVNSST--PITSSSVLNSSTPITSSTALNTST 1978

Query: 761  P 763
            P
Sbjct: 1979 P 1979



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +2

Query: 581  TNSGKFNTSTRELHKTFLKVYKR*TAVNIVSMSAIKKMTCFSLSSGSIPVTT*AELSTSS 760
            T+S   N+ST     + L      T+  +V+ S    +T  S+ + S P+T+   L+TS+
Sbjct: 2113 TSSSVLNSSTPITSSSVLNSSTPITSSTVVNSST--PITSSSVLNSSTPITSSTALNTST 2170

Query: 761  P 763
            P
Sbjct: 2171 P 2171



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +2

Query: 533  SRKFTMKAVQLKTQMATNSGKFNTSTRELHKTFLKVYKR*TAVNIVSMSAIKKMTCFSLS 712
            S   T   V   +   T+S   N+ST     T L      T+  +++ S    +T  S+ 
Sbjct: 3009 STPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSTVLNSST--PITSSSVL 3066

Query: 713  SGSIPVTT*AELSTSSP 763
            + S P+T+   L+TS+P
Sbjct: 3067 NSSTPITSSTALNTSTP 3083


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 805 WFEFFTNVFLNL*ISLVPVNFXGSGS 882
           WF F  NV L++ I+++ VNF  S S
Sbjct: 727 WFLFSNNVVLSMFIAVIQVNFAPSES 752


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,114
Number of Sequences: 5004
Number of extensions: 50153
Number of successful extensions: 154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)