Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19a13
(870 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 34 0.023
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 33 0.053
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 33 0.053
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.12
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 31 0.16
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.21
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 31 0.28
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 31 0.28
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc... 30 0.37
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 30 0.49
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 30 0.49
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 29 0.65
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 29 0.86
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha... 28 1.5
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 2.0
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 28 2.0
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 28 2.0
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 27 2.6
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 3.5
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 4.6
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 26 6.1
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 6.1
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 8.0
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 26 8.0
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 26 8.0
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 8.0
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 34.3 bits (75), Expect = 0.023
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Frame = -1
Query: 588 NALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFE---QFELR 418
N++ +QT+ DL+ + E + +K L ++ ET KND N E +E
Sbjct: 315 NSINEIQTQNR--DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETE 372
Query: 417 LNELDAKLNMLQS----------AEKLKTAIVTES---KNGTVTFPRDITKHQHLAIFSE 277
+ E KLN ++ A++LK + ++ES K G + F +++ + L ++ E
Sbjct: 373 MKEARQKLNNKEALISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSEQRDL-LYQE 431
Query: 276 RIDDRIKLAFVLGQERHFRKRKMRFED 196
+I IK E FRK + E+
Sbjct: 432 QIQSSIK-----DMENVFRKNEYLMEE 453
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 33.1 bits (72), Expect = 0.053
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Frame = -1
Query: 603 FDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHE-TFKNDVGN--RFE 433
F+ ++ + T G + + + IE +L ++ +S F+ T+ + K++V F
Sbjct: 559 FEQLLFSISKVTTNGPSETISEDIEEILPSLESSERSSTPFLNTNSASLKSEVVQLTTFS 618
Query: 432 QFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVT 325
F+L+L L L++LQS + + S+ G T
Sbjct: 619 DFQLKLKTLQCVLDILQSLSNWAESGLYLSRRGVST 654
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 33.1 bits (72), Expect = 0.053
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = -1
Query: 564 EGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNML 385
EGE DD+ +ES + +++ +S+K + E +ND R E + + L A L +
Sbjct: 373 EGELDDILTTLESDREQLRRHEEHSQKLLKFIEEIRNDYEERIHALESQNSALKAHLRLA 432
Query: 384 QSA 376
A
Sbjct: 433 VDA 435
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 31.9 bits (69), Expect = 0.12
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = -1
Query: 570 QTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLN 391
+ EG++ DL KI + K KLNT ++T + + ++ E R+ L+ +LN
Sbjct: 512 ELEGKKADLTSKINRLDKDFVKLNTTYS--LLTDQVKTKQLA--LQEIESRVIRLEERLN 567
Query: 390 MLQSAEKLKTAIVTESK 340
MLQ ++ AI + S+
Sbjct: 568 MLQKL-SMQPAISSSSE 583
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 31.5 bits (68), Expect = 0.16
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 12/168 (7%)
Frame = -1
Query: 774 GLEIAHDDILDCNWDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDN 595
GLE + IL +S ++Y+ + + QK R L K + N D
Sbjct: 358 GLE--YTQILVSQLESQRLYYESHLSNMSQKLSRVNEEL----VLKTKIATASSNANTDL 411
Query: 594 KSNALLHLQTEGERDDLRDKIESVLKHVK----KLNTNSEKFMVTHETFKNDVGNRFEQ- 430
+S + +RDD ++ S L+H+K + + +E +V +T + + +Q
Sbjct: 412 RSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRIQTLEKQNTTKSDQI 471
Query: 429 --FELRLNELDAKLNMLQ-----SAEKLKTAIVTESKNGTVTFPRDIT 307
+ ++N+L+ +L L S E K E +NGT+ P + T
Sbjct: 472 VSMQFQINDLNEQLRDLMFTISASQEIQKMGQSEELQNGTIVLPNNST 519
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 31.1 bits (67), Expect = 0.21
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Frame = -1
Query: 630 LLKILMRLNFDNKSNALLHLQTEGERDDLRDK-----------IESVLKHVKKLNTNSEK 484
L K+L D++ LL Q E ER DL+ E+ +K ++ TNS+
Sbjct: 521 LRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSLESSLTNSQA 580
Query: 483 FMVTHETFKNDVGNRFEQFELRLNELDAKLNML 385
V+ + N++ ++ ++ +L+LNE + K L
Sbjct: 581 ECVSFQEKINELNSQIDELKLKLNEANKKYQEL 613
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -1
Query: 504 LNTNSEKFMVTHETFKNDVGNRFEQFELRLNELD-AKLNMLQSAEKLKTAIVTESKN 337
L NSEKF E+ K+ V N + NE+D + N+L + +T KN
Sbjct: 360 LKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDECRRNLLWAESSCETIREENQKN 416
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 459 KNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFPRDITKH 301
+ND + F+ L LNE+++++N+L+ A A +T NG + I H
Sbjct: 733 RNDTLSLFQN-SLYLNEVESRINILEQAGMYPIAYLTAKSNGLEEKAQQILSH 784
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 30.7 bits (66), Expect = 0.28
Identities = 24/118 (20%), Positives = 50/118 (42%)
Frame = -1
Query: 735 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGE 556
W + ++ + E IF K S + N + + F Q M FD N + ++ GE
Sbjct: 99 WANTKLGGIFERIFSKMDSMQ--NDMNSRFDAMQNE----MNSRFDTVQNEMTSMK--GE 150
Query: 555 RDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQ 382
+++ ++ + + +LNT + E + RF + R N +D + + ++
Sbjct: 151 MAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSME 208
>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 553
Score = 30.3 bits (65), Expect = 0.37
Identities = 23/109 (21%), Positives = 43/109 (39%)
Frame = -1
Query: 645 ATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHE 466
AT+QG +L+ +N L L E DD D+ + + ++ +
Sbjct: 317 ATRQGSFALLLFAIISLAANTALPLLLEDTEDDEEDESSDASNNEYNIQERNDLGNIRTG 376
Query: 465 TFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVTESKNGTVTFP 319
T +GN E R ++ +L S+ + T I ++ + +T P
Sbjct: 377 TNTPRLGNLSETTSFRSENEPSRRRLLPSSRSIMTTISSKVQIKGLTLP 425
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 29.9 bits (64), Expect = 0.49
Identities = 24/118 (20%), Positives = 50/118 (42%)
Frame = -1
Query: 735 WDSDQVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGE 556
W + ++ + E IF K S + N + + F Q M FD N + ++ GE
Sbjct: 99 WANTKLGGIFERIFSKMDSMQ--NDMNSRFDAMQNE----MNSRFDAVQNEMTSMK--GE 150
Query: 555 RDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQ 382
+++ ++ + + +LNT + E + RF + R N +D + + ++
Sbjct: 151 MAEMKVEMVEMKRETIRLNTRIDLLEQKTEARFQSIEQRFNSIDQRFNSIDRRFDSME 208
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.9 bits (64), Expect = 0.49
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 1/150 (0%)
Frame = -1
Query: 777 KGLEIAHDDILDCNWDSDQVYHLNEIIFHK-QKSKRDLNSLGALFATKQGLLKILMRLNF 601
K EI + +CN D++ E++ + KR SL + K+ L K L N
Sbjct: 298 KKFEILKRERNECNAKIDELQDKLELLTDAYNREKRRARSLEERMS-KEMLTK-LGESNV 355
Query: 600 DNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFEL 421
D+ A + + E++ L + ++S+ + + + + + ++ E++ +GN+ +
Sbjct: 356 DDGMAASRYDTVKREKERLSEHLKSLQEQYEHIQSVYKNVLLDRESYIMRLGNKISENNE 415
Query: 420 RLNELDAKLNMLQSAEKLKTAIVTESKNGT 331
LNE LQ+ K + VT T
Sbjct: 416 LLNENRVLKEKLQTYLDKKESNVTSKIKST 445
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.65
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 223 KMSLLAQNKSE-FDAVVDAFRKYGQMLVFGNVARKR 327
K +LL + KS+ FD V+AF KYG+ F V R +
Sbjct: 2 KTALLLKTKSQPFDPYVEAFEKYGRDTAFIPVLRHK 37
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 29.1 bits (62), Expect = 0.86
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = -1
Query: 711 LNEIIFHKQKSKRDLNSLGALFATKQGLLKILMR--LNFDNKSNALLHLQTEGERDDLRD 538
LN ++ +R +N++ T QG + + +NF NK N L E DLR
Sbjct: 114 LNFLMSGMADLQRTINTMQGTMNTMQGTMNTMQENMINFTNKVNTLDMRSVRAENRDLR- 172
Query: 537 KIESVLKHVKKLNTNS 490
K V+ V +N N+
Sbjct: 173 KGAYVISPVPFINGNN 188
>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/71 (19%), Positives = 33/71 (46%)
Frame = -1
Query: 699 IFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHLQTEGERDDLRDKIESVL 520
I ++++ D SL ++ ++ NF +++ H ++ + +LR + +
Sbjct: 247 IIDQEETSSDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENHENSKKHKKNLRKMNQEIK 306
Query: 519 KHVKKLNTNSE 487
KH K+ N+E
Sbjct: 307 KHAKEAQKNAE 317
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = -1
Query: 552 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFK-----NDVGNRFEQFELRLNELDAKLNM 388
D+ + ++ ++K KKL ++E+ H T K N +G F + ++ L +D KL++
Sbjct: 208 DENGEILKRLVKKEKKLKNDNERLENEHRTEKLNVNANSLGKSFVKHDIPLPPVDLKLDI 267
Query: 387 LQ 382
+
Sbjct: 268 FE 269
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 705 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 586
++ FH Q+ KRD+ +L ++ T L L+ F + +N
Sbjct: 79 QLEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118
>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = -1
Query: 150 AIQCINEKLYDKHYKIRKIAKRVI 79
A++CIN+K +D+H KI+K+ V+
Sbjct: 57 ALKCINKKKHDEH-KIKKLRNEVL 79
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = -1
Query: 528 SVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAEKLKTAIVT 349
+ L H+ L + H TFK++V N +EL +EL A + S+ + I T
Sbjct: 350 AALNHISALEKETISHTDLHHTFKHEV-NSSNNYELTNDELAASSPLYTSSSVPPSHITT 408
Query: 348 ES 343
S
Sbjct: 409 GS 410
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 756 RAQFQDLCKNLLHCRNFAFVSL 821
RA+F +LC N+LH R + SL
Sbjct: 396 RAKFNNLCSNILHFRALSAYSL 417
>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 34 SWYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLNCQQGIWVHTVIEHF-HVVFKAH 210
SW+ F+ + + D F +F +F E V++L G +V+ ++ F ++ +
Sbjct: 279 SWFPQFS--LKKLAKDTYFVFFMAIKIFFSEPIVSSLGIYNG-FVNGLLYFFLQAIWPVY 335
Query: 211 FSLAKMSLLA 240
FS+ KMS +A
Sbjct: 336 FSIYKMSDMA 345
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 16 FLFYNTSWYNLFNYIMSTIHVDYTFSYFSNFVMFIVEFFVNTLN 147
+ F TSW NL+ +I TI +F + ++ F LN
Sbjct: 415 YCFKITSWVNLYGWITCTIARTLSFIKLNIRTFYLTAFLCALLN 458
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 7 YTCFLFYNTSWYNLFNYIMSTIHVDYTFSYFSNFV 111
Y+ FLF + +Y+L + + + +DY F SNFV
Sbjct: 6 YSVFLFLHIVFYSLLSAVNGSPSLDY-FETCSNFV 39
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 8.0
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -1
Query: 600 DNKSNALLHLQTEGER--DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQF 427
D +SN +H ++ +DLR KI + + V K+N E +T E K + + +Q
Sbjct: 588 DIESNLDIHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEG--ITSEDMKKKI-DEIQQL 644
Query: 426 ELRLNE 409
L++ E
Sbjct: 645 SLKVFE 650
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.8 bits (54), Expect = 8.0
Identities = 23/71 (32%), Positives = 30/71 (42%)
Frame = -1
Query: 609 LNFDNKSNALLHLQTEGERDDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQ 430
+N N+ +HL L DK + L + K TN+ KF V ET +G Q
Sbjct: 567 INLLRDENSYVHLNVISAVVSLCDKYDDSLIRLLKEYTNTNKFTV-DETLL--IGQAIYQ 623
Query: 429 FELRLNELDAK 397
R EL AK
Sbjct: 624 TMERQGELVAK 634
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 8.0
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = -3
Query: 862 SNATRTVFKYRYVHNDTNAKFLQCNRFLQRS*NCARRHT*LQLGQRSSLPFKRNYFSQAE 683
+N T F Y +N + L+ NR + NC + T QLG + +S
Sbjct: 336 TNVTEDKFNKEYRYNIRHTYGLEGNRKNYKGYNCQQILTGPQLGPGDAHGCPYRTYSVNN 395
Query: 682 IQTRSQLVGRIVRDQAGVVENFDAVK 605
+ + +G I D AG E +AVK
Sbjct: 396 LVSALASMG-IAPDSAGCREVVEAVK 420
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 8.0
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Frame = +3
Query: 645 RTMRPTS*DRVWISACEK*FRLN--GKLDR---CPNCNQVCRRAQFQDLCKNL 788
RT +P D +W +AC++ +N K R P C Q+C +Q D NL
Sbjct: 81 RTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRC-QICVHSQRNDGDDNL 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,560,638
Number of Sequences: 5004
Number of extensions: 74349
Number of successful extensions: 269
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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