Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a10
         (1117 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    27   4.7  
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual    27   4.7  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   6.2  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   8.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   8.3  

>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 455 DYLSGRSSGTPATRGAASHRGSRLELG 375
           DY+S   +GTPA +G  +  G+R   G
Sbjct: 441 DYISDLYTGTPALKGDVTRHGTRTIFG 467


>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 248 DMLLLRDEAVEDASPSGTAVLPNPGNP 168
           D +++     E+ +PS TA LP+P NP
Sbjct: 60  DGIMVGSRTAENDNPSLTAKLPDPANP 86


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 173 CQDSVTRPFLTARRPR-PLHLSAEAYLFQ--LRQSLHQQGHPLDLHI 304
           C D + RP L ++ PR  L L  +  L     R S    G P+++H+
Sbjct: 288 CADKIPRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSGQPIEVHV 334


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 707  CVHCSRTAGCAHCSRAATCARSPASDVHT 621
            CV C+  A C +CSR +       S V T
Sbjct: 1563 CVCCASFANCVYCSRCSDSLLGEESTVST 1591


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 707  CVHCSRTAGCAHCSRAATCARSPASDVHT 621
            CV C+  A C +CSR +       S V T
Sbjct: 1563 CVCCASFANCVYCSRCSDSLLGEESTVST 1591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,466,305
Number of Sequences: 5004
Number of extensions: 63250
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 591678054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)