Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc19a10
(1117 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1059 - 10775143-10776063 36 0.058
12_02_1046 + 25662715-25662884,25663163-25663757 30 2.9
06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818 30 3.8
02_01_0794 - 5955763-5957238 29 5.0
06_03_0585 - 22528082-22530100 29 6.7
06_03_0580 + 22489184-22491202 29 6.7
04_04_1404 + 33302080-33303341,33303435-33305307 29 6.7
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166 29 8.8
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 29 8.8
02_05_0543 + 29872168-29872767,29873089-29873115 29 8.8
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 29 8.8
>08_01_1059 - 10775143-10776063
Length = 306
Score = 35.9 bits (79), Expect = 0.058
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 88 HTNATHKKEAKAQRGIVFIVLALALGRGLPGFGNTAVP 201
H NA ++ + A+RG A A GRGL GFG+ VP
Sbjct: 125 HQNAHKRERSLAKRGAAVAAAAAAAGRGLYGFGDPFVP 162
>12_02_1046 + 25662715-25662884,25663163-25663757
Length = 254
Score = 30.3 bits (65), Expect = 2.9
Identities = 22/70 (31%), Positives = 28/70 (40%)
Frame = -3
Query: 617 RVARVPLHARAHLLLTCIPHELLACRRLHGAVRLAVTQRAMSLSLRPATADYPTDYLSGR 438
RV+R P A ++ L RRL G ++LAV +R RP P LS R
Sbjct: 124 RVSRPPAGTAATRSISPFRSGLARVRRLDGPLKLAVVRRRDQFDRRPLHHAAPAGLLSRR 183
Query: 437 SSGTPATRGA 408
R A
Sbjct: 184 RPSRHGARDA 193
>06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818
Length = 375
Score = 29.9 bits (64), Expect = 3.8
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 520 RTAPCSRRHASNSCGMHVR-SR*ARACSGTRATRAVCTSEAGERAQVAAREQCAQPAVRE 696
R+ PC + N+CG+ R +R A SG A+ +A + AA AQP V++
Sbjct: 200 RSGPCGPKSLCNACGIRQRKARRAMMASGLPASPNAAGPKAAAHSGAAA-VAAAQPKVKK 258
Query: 697 Q 699
+
Sbjct: 259 E 259
>02_01_0794 - 5955763-5957238
Length = 491
Score = 29.5 bits (63), Expect = 5.0
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 902 TARVPLAARTARVPLAARTARVPLAARVHLLLAHTARVRLLQT 774
TA+ P PLAA +P+ LL AH AR L+ T
Sbjct: 6 TAQAPAQPHFVLAPLAAHGHLIPMVDLAGLLAAHGARASLVTT 48
>06_03_0585 - 22528082-22530100
Length = 672
Score = 29.1 bits (62), Expect = 6.7
Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 7/185 (3%)
Frame = -3
Query: 662 AATCARSPASDVHTARVARVPLHARAHLLLTCIPHELLACRRLHGAVRLAVTQRAMSLSL 483
AA AR P++ T +P A L P LL R L + ++ VT R S
Sbjct: 37 AAAAARDPSAGNDT--FGALPA---ALLRQLSTPSPLLPTRLLSLSAQVPVTVRLAGASF 91
Query: 482 RPATADYPTDYLSGRSSGTPATRGAASHRGSRLELGRLLCFHIILTS---GPR*HAAFSS 312
PAT ++ +S ++R +S R RL L + + +S PR AA +
Sbjct: 92 PPATGRLLESFV---NSAVSSSRFLSSRRPHRLALSHKIHLEVAASSSQLAPRAAAAVRA 148
Query: 311 KLICEGREGDLVDASS-DVAGRDMLLLRD-EAVED--ASPSGTAVLPNPGNPRPRASAKT 144
L SS + D L+ D A+ D ++PS L N G P+PR A T
Sbjct: 149 HLDSSAAPFHAAALSSVPYSVVDDLVAEDYRALVDTGSAPSVYIYLLNLG-PQPRPYAYT 207
Query: 143 IKTIP 129
+ P
Sbjct: 208 AASSP 212
>06_03_0580 + 22489184-22491202
Length = 672
Score = 29.1 bits (62), Expect = 6.7
Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 7/185 (3%)
Frame = -3
Query: 662 AATCARSPASDVHTARVARVPLHARAHLLLTCIPHELLACRRLHGAVRLAVTQRAMSLSL 483
AA AR P++ T +P A L P LL R L + ++ VT R S
Sbjct: 37 AAAAARDPSAGNDT--FGALPA---ALLRQLSTPSPLLPTRLLSLSAQVPVTVRLAGASF 91
Query: 482 RPATADYPTDYLSGRSSGTPATRGAASHRGSRLELGRLLCFHIILTS---GPR*HAAFSS 312
PAT ++ +S ++R +S R RL L + + +S PR AA +
Sbjct: 92 PPATGRLLESFV---NSAVSSSRFLSSRRPHRLALSHKIHLEVAASSSQLAPRAAAAVRA 148
Query: 311 KLICEGREGDLVDASS-DVAGRDMLLLRD-EAVED--ASPSGTAVLPNPGNPRPRASAKT 144
L SS + D L+ D A+ D ++PS L N G P+PR A T
Sbjct: 149 HLDSSAAPFHAAALSSVPYSVVDDLVAEDYRALVDTGSAPSVYIYLLNLG-PQPRPYAYT 207
Query: 143 IKTIP 129
+ P
Sbjct: 208 AASSP 212
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 29.1 bits (62), Expect = 6.7
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 776 SEAGERAQCAPEVDERAQPAAREQCAQPAAREXC--AQPAVREQCAQYARXK 925
S+ E A E +E A+ AAR + A+ AARE A+ A +E+ A+ + K
Sbjct: 451 SDRREAADRLREAEEAAREAARIRQAEEAAREEAARAEEAAKEEAARARQAK 502
>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
Length = 983
Score = 28.7 bits (61), Expect = 8.8
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +1
Query: 541 RHASNSCGMHVRSR*ARACSGTRATRAVCTSEAGER-------AQVAAREQCAQPAVREQ 699
R A + R R A A + + ATR EA +R AQVA R + A+ A RE+
Sbjct: 392 RQAEEAAREEARLRQAEATTSSEATRETDRQEAADRLREAEEAAQVAVRARQAEEAAREE 451
>03_06_0353 -
33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 28.7 bits (61), Expect = 8.8
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +2
Query: 368 AAVPAPVCSHDARLHHVWRASRSTVLIDNPLGSPQ*QAAD*ATSPSASLPVVQHRAVGGM 547
AA+ A + HH + S+ NP + Q +AA A + A+ P +QHR V
Sbjct: 70 AALAAYHHQQQQQYHHHQQLLHSSAYHQNPTHNLQHRAAVPAPAAPAAAPSIQHRPVAPA 129
Query: 548 RATRA 562
A A
Sbjct: 130 TAAAA 134
>02_05_0543 + 29872168-29872767,29873089-29873115
Length = 208
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 914 HTVRTARVPLAAR-TARVPLAARTARVPLAARVHLLLAHTARVR 786
H T R+P+ R P A AR+ A R HL+ H A VR
Sbjct: 34 HRPTTVRIPVTTPGPERPPDDAAAARIQAAFRGHLVRRHAAAVR 77
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 28.7 bits (61), Expect = 8.8
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = +2
Query: 797 QCAPEVDERAQPAAREQCAQPA--AREXCAQPAVREQCAQYARXK*MGRAQPAAREQCA 967
+ A E ERA ARE+ A+ A A+E A+ A RE+ A+ A + RA ARE+ A
Sbjct: 606 KAAAEARERAAAEARERAAKAAAEAKERVAEEA-RERAAK-AAAEARERAATEAREKAA 662
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,096,042
Number of Sequences: 37544
Number of extensions: 567407
Number of successful extensions: 2368
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2363
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3363032448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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