Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a10
         (1117 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF010326-1|AAB62575.1|  182|Drosophila melanogaster short form o...    33   0.71 
AE013599-1759|AAF58343.1| 1154|Drosophila melanogaster CG18368-P...    31   2.2  
BT030116-1|ABN49255.1|  286|Drosophila melanogaster IP11147p pro...    30   6.6  
AE014297-540|AAF54077.2|  286|Drosophila melanogaster CG1984-PA ...    30   6.6  
AY069656-1|AAL39801.1|  236|Drosophila melanogaster LD43057p pro...    29   8.7  

>AF010326-1|AAB62575.1|  182|Drosophila melanogaster short form of
           CHIP protein.
          Length = 182

 Score = 33.1 bits (72), Expect = 0.71
 Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -3

Query: 662 AATCARSPASDVHTARVARVPLHARAHLLLTCIPHELLACRRLHGAVRLAVTQRAMSL-S 486
           AA+C+R+P S      +AR  L    HLL     H  L  RR   A   +  +RA+S+  
Sbjct: 68  AASCSRTPTS------LARTHLSIPPHLLPRAHRHPDLLVRRTFPATTRSRRRRAISMVQ 121

Query: 485 LRPATADYPTDYLSGRSSGTPA 420
           L   +A +P D  S  S+G PA
Sbjct: 122 LAGPSARHPRD--SASSAGRPA 141


>AE013599-1759|AAF58343.1| 1154|Drosophila melanogaster CG18368-PA
           protein.
          Length = 1154

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 770 CTSEAGERAQCAPEVDER-AQPAAREQCAQPAAREXCAQPAVREQCAQ 910
           C  E   R     E+ E+ A+   +E+CA    RE CA   ++++CA+
Sbjct: 814 CAEEEFRRKCAENELKEKCAEQELKEKCALKEFRELCANEELKQKCAE 861



 Score = 29.9 bits (64), Expect = 6.6
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
 Frame = +2

Query: 791 RAQCAPEV--DERAQPAAREQCAQPAAREXCAQPAVREQCAQYARXK*MGRAQPAAREQC 964
           +++CA E   ++ A    +E+CA+   R+ CA   ++E+CA+    K    A+   +E+C
Sbjct: 748 KSKCAKEELKEKCAIEELKEKCAEEELRKMCAIEDLKEKCAEEELKK--KCAKENLKEKC 805

Query: 965 AQ 970
           A+
Sbjct: 806 AR 807


>BT030116-1|ABN49255.1|  286|Drosophila melanogaster IP11147p
           protein.
          Length = 286

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 779 EAGERAQCAPEVDERAQPAAREQCAQPAAREXCAQPAVREQCAQYAR 919
           E  ER QC    +++      + C   AA+E C + A +E C + A+
Sbjct: 235 EVAEREQCKKLAEKKKFKKMIKICKNLAAKEKCKKMAEKEMCRKKAK 281


>AE014297-540|AAF54077.2|  286|Drosophila melanogaster CG1984-PA
           protein.
          Length = 286

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 779 EAGERAQCAPEVDERAQPAAREQCAQPAAREXCAQPAVREQCAQYAR 919
           E  ER QC    +++      + C   AA+E C + A +E C + A+
Sbjct: 235 EVAEREQCKKLAEKKKFKKMIKICKNLAAKEKCKKMAEKEMCRKKAK 281


>AY069656-1|AAL39801.1|  236|Drosophila melanogaster LD43057p
           protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -3

Query: 515 AVTQRAMSLSLRPATADYPTDYLSGRSSGTPATRGAASHRGSRLELGRLLCFHII 351
           A    A + +   A   Y   +L G +  TPA      H GSR   G L   H++
Sbjct: 100 AAAANAAAAAAAVAALQYSPQFLQGPAGATPAAVEHDGHAGSRRRCGPLAGQHVL 154


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,594,081
Number of Sequences: 53049
Number of extensions: 877922
Number of successful extensions: 3655
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3635
length of database: 24,988,368
effective HSP length: 86
effective length of database: 20,426,154
effective search space used: 5821453890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)