Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a10
         (1117 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    30   3.4  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    30   3.4  
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ...    29   6.0  
U80455-10|AAB37887.2|  395|Caenorhabditis elegans Activated in b...    29   7.9  

>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 514 ASRTAPCSRRHASNSCGMHVRSR*ARACSGTRATRAVCTSEAGERAQVAAREQC 675
           ++R   CS   +++SCG    S  A +C  T   R  C+S  G   ++  +  C
Sbjct: 12  SNRVCSCSPLPSTSSCGCQASSSCANSCRST--CRPTCSSSGGFGCRMNCQNTC 63


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
 Frame = +2

Query: 797 QCAPEVDERAQPAAREQCAQPAAREXCAQPAVREQCAQYA-----RXK*MGRAQPAAREQ 961
           QCA       QP+  +Q   PA +  C+   V +Q AQ       + +      PA +  
Sbjct: 220 QCASSCMPSCQPSCVQQACAPACQPMCSSQCVEQQQAQIVVVQQPQQQCTSSCMPACQSS 279

Query: 962 CAQ 970
           C Q
Sbjct: 280 CVQ 282


>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
            protein R10F2.1 protein.
          Length = 2779

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = -1

Query: 367  SASTSSLRVDPGDMQP-----FLRN*YVKVERVTLLMQALT*LEEICFC*EMKRSRTPRR 203
            S +T  L + P D+QP      L +  V++   +L++     +  IC C    R +T   
Sbjct: 2526 SKTTVYLEIGPFDVQPSLPKLLLHSKPVQIAVASLILLLFLLIVVICICMCKSRRKTQNE 2585

Query: 202  QERPCYRILATPDREPA 152
            +E+    ++ T +R P+
Sbjct: 2586 KEKKHPDVIVTAERRPS 2602


>U80455-10|AAB37887.2|  395|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 11 protein.
          Length = 395

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = +2

Query: 797 QCAPEVDERAQPAAREQCAQPAAREXCAQPAVREQCAQYARXK*MGRAQPAAREQCAQ 970
           QCAP+ D + QPA    C+ PAA    A P   +Q  Q      + R  P  + QC Q
Sbjct: 316 QCAPQCDAQCQPA----CS-PAAP---AAPVQTQQQIQLTINVPVARQSPQCQPQCEQ 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,489,406
Number of Sequences: 27780
Number of extensions: 417784
Number of successful extensions: 1534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1529
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3005123904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)