Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a10
         (1117 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   6.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   6.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   8.5  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 10/49 (20%), Positives = 27/49 (55%)
 Frame = +2

Query: 179 DSVTRPFLTARRPRPLHLSAEAYLFQLRQSLHQQGHPLDLHILISKKRL 325
           D +TRP        P+++  +AY++ ++ ++  +    D+H+++  + L
Sbjct: 24  DKMTRPPGEINSINPINVYTKAYIYTIKSNM-AKTLQFDVHMMLQFRYL 71


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 471 SSRPQTKRHRPLRHCQSYSTVQSAACEQLVR 563
           S++   KRH+  +H Q  ++   A C ++ R
Sbjct: 382 STKLTLKRHKEQQHFQPLNSAVCALCHKVFR 412


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -2

Query: 462 PNGLSIRTVERDARHTWCSLASWEQTGAGT 373
           P+G+ I + ++D +  W    S+++  +GT
Sbjct: 359 PSGMKIISSKKDRQELWIFTISFQKYMSGT 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,187
Number of Sequences: 438
Number of extensions: 4735
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 37596312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)