Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a09
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    31   0.22 
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    30   0.51 
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    30   0.51 
SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa...    29   0.67 
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    27   2.7  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    27   3.6  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    27   3.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   3.6  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    27   3.6  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    27   4.8  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   4.8  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    27   4.8  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    26   8.3  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    26   8.3  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    26   8.3  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    26   8.3  

>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
 Frame = -3

Query: 521 RLIGNLMNNSVSSTFLSDDTFLLMPCTNPPAHTSNCYNNSI-----YKEGRWVANTDSSQ 357
           +L  N++ NSV+   L+ D  L     +P     N +   +     +++  WV    +  
Sbjct: 218 KLFANIVANSVA---LTHDYSLQQSHEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKF 274

Query: 356 CIDFSNYKELAIDDDVEF---WIPTIGN-TTYHDSWKDASGWS-FIAQQKSNLI 210
            +DF  YK+  +    EF    IP +GN   Y+  W +    +  IAQ K +LI
Sbjct: 275 SVDFLLYKKGPVFSHAEFAILLIPCVGNKQKYNMQWHEVHCLNRVIAQVKKSLI 328


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +3

Query: 516 QTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 656
           QT  +LGH N   +Q +++ +    + L +++++      +LLN+H+
Sbjct: 175 QTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHK 221


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = -3

Query: 221 SNLITTMENTKFGGVGTSLNDITSMAEGELAAKLTSFMFG 102
           SNL+      KF     +L++++++ EG++++KL+S + G
Sbjct: 38  SNLLKLQSFAKFESTVDALDNVSALVEGKVSSKLSSLLEG 77


>SPBC1711.14 |rec15||meiotic recombination protein
           Rec15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 504 EIANQTLVHLGHGNYQVVQHIVYLVDMRMHQLNVHFQQI 620
           E+ NQT+  LG    +V Q    LV   ++Q+N+  QQ+
Sbjct: 45  EVVNQTIGQLGRSISEVQQQNSQLVLQSLNQINMSMQQV 83


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 439 LVHGISKNVSSDKNVEETELFMRLPIKRSSTLATETIRSCSILFILLIC 585
           ++HG+ +  +      E   F    +KR  TL TE +   S   ILL C
Sbjct: 603 IIHGLERLKADIALHSEILCFQLYDLKRDGTLRTEEVVELSESLILLCC 651


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 839 VTREHCLIDNDIYDLSKNTWNC 774
           V+R+H +++   YDL   TWNC
Sbjct: 127 VSRKHAVVE---YDLDDQTWNC 145


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 338 YKELAIDDDVEFWIPTIGNTTYHDSWKDASGWS 240
           Y +  + D + + IPT+     H+ WK+ + WS
Sbjct: 172 YADSVLWDVLHYRIPTLDGYQQHNLWKNFTRWS 204


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
 Frame = -3

Query: 863 DDKNNPESVTREH------CLIDNDIYDLSKNTWNCRFNRCIKRKVEHQVKKRPPTWRHN 702
           D+K N ES   +        L++ +     K+T++    + IK + + ++KK P   R  
Sbjct: 124 DEKENDESEFEDGQQGFIPLLVNRNSDPSEKSTFSLNILKAIK-ETDEEIKKNPGKARLW 182

Query: 701 VR-AKYTEG---DTATKGDLMHIQEELMYENDLLKMNIELMHAHINKINNMLHDLIVS 540
           ++  +Y E    D   + +   I+ +L  EN+   + + ++   + ++    H+++VS
Sbjct: 183 IKMCEYQERLLFDEFRRSNSDDIKGKLKIENNSRSVKLSILEKALKEVKGCDHEILVS 240


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
 Frame = -3

Query: 641 EELMYENDLLKMNIELMHAHINKINNMLHDLIVSVAKVDERL--IGNL-MNNSVSSTFLS 471
           E++  E +  K+  E++   +++  N+ H+    + K+  +L  + NL +++++ S F+S
Sbjct: 128 EDIEIEYEYSKILPEVIDLDLSR--NLFHEFF-PILKLCSQLPSLRNLTLDSNLFSNFIS 184

Query: 470 DDTFLLMPCTNPPAHTSNCYNNSIYKEGRWVANTDSSQCIDFSNYKELAIDDDVEF 303
            +T LL+P        + C  NS  K+ +W+  T  S  + +    E+ +     F
Sbjct: 185 SNTVLLIPHLT-QLSVNGCGLNS--KDVQWITETFPSLEVLYLEANEIILSKATSF 237


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 581 INKINNMLHDLIVSVAKVDERLIGNLMNNSVSSTFLSDDTFLLMPCTNPP 432
           IN++NN LH+    + +V ++L G L   ++    LS D    M    PP
Sbjct: 50  INELNNSLHNFDFKIKRVQDQLDGRL---TLHFQNLSGDPVSQMATPYPP 96


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +3

Query: 546 YQVVQHIVYLVDMRMHQLNVHFQQIVFVHQLLLNMHQ 656
           Y ++  ++    +    LN+H+  ++ +H  LLN H+
Sbjct: 105 YNILLPLLLTPSLLQGPLNLHYADLLLLHLYLLNCHE 141


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 818 IDNDIYDLSKNTWNCRFNRCIKRKVEHQVKK 726
           IDN+I DL KN  + +    + ++  HQ+KK
Sbjct: 94  IDNNISDLKKNLHSNKKLEAVLKEELHQIKK 124


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 704 NVRAKYTEGDTATKGDLMHIQEELMYENDLLKMNIELMHAHINKI 570
           N+R ++TE     +      ++ L+ E D L  ++E  H  I +I
Sbjct: 320 NLRKRFTEQVRVEETRFRQWEQRLIAERDSLNKDLEAQHVQIKQI 364


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 123 FGGQFAFSHGSDVVQTGADAAKLGVLHGGYEIAFLLGNKRPTAGIFPTVVIGCVA 287
           +GG  A  +  D +++ A   + G++  G    +  GN RPT G       GCVA
Sbjct: 119 YGGVNALFNTIDWIESSAWDGRDGIVVAGDIALYAKGNARPTGG------AGCVA 167


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 290 IGNTTYHDSWKDASGWSFIAQQKSNLITTMENT 192
           +  + Y D+W D   WS I ++ +N +   E +
Sbjct: 241 LNRSRYIDTWFDCIDWSVIEERLTNSLANSEQS 273


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 428 HTSNCYNNSIYKEGRWVANTDSSQCIDF 345
           HT   Y+N+ ++EG +V   +S + + F
Sbjct: 438 HTHRKYSNNTWEEGEYVVVANSDETVKF 465


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 228  LGNKRPTAGIFPTVVIGCV 284
            L  +RP AGIF T +IG V
Sbjct: 1046 LSKERPQAGIFNTYIIGSV 1064


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,687,406
Number of Sequences: 5004
Number of extensions: 77537
Number of successful extensions: 301
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)