Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a08
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   3.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.7  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    27   3.7  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   4.9  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   4.9  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   6.4  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   8.5  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 252 WRQIAFCYVYLSRRG 296
           W  +AFC+ YL RRG
Sbjct: 706 WAAVAFCFNYLIRRG 720


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 19/76 (25%), Positives = 36/76 (47%)
 Frame = -2

Query: 392 TVSSQKSRITFQDASLPSIVFTMVSSDRFSPTTATTQVNVTKGNLSPSLRGSNLPCRIAK 213
           T+SS  S  +   ++L S   +  SS   SPT++++ ++ +  + S S   S      + 
Sbjct: 306 TISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSS 365

Query: 212 *SFKALIKPSQNLSFS 165
            SF + +  S + S S
Sbjct: 366 SSFSSTVSSSSSTSSS 381


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 370 ASPSRTRRCQASYSRWSAATGSLPQP 293
           A+ + T  CQA+ S W AAT   P P
Sbjct: 337 ATLTATMSCQATNSAWMAATSLPPTP 362


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 645 EIVSQDHQLRHQLSVP 598
           E+V   HQ+RHQ+S+P
Sbjct: 159 EVVELRHQVRHQVSIP 174


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 410 SRTYIRTVSSQKSRITFQDASLPS 339
           S T IRT S+     TFQD +LPS
Sbjct: 691 SSTLIRTFSTFHLATTFQDTNLPS 714


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 307 NLSLLTIVNTMLGSDASW 360
           NLS+ T+ N + GSD +W
Sbjct: 442 NLSVSTVFNLLCGSDTTW 459


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 362 FQDASLPSIVF-TMVSSDRFSPTTATTQVNVTKG--NLSPSLRGSNLP 228
           F D S+P + F  ++ SD  SP+  T+ +NV KG   L  SL G   P
Sbjct: 651 FNDYSIPLVQFLNLLKSDIDSPSEETS-INVEKGFHFLLYSLTGMKYP 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,337
Number of Sequences: 5004
Number of extensions: 60342
Number of successful extensions: 204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)