Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a08
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    31   0.85 
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL117199-2|CAB55041.1|  189|Caenorhabditis elegans Hypothetical ...    28   7.9  
AL117199-1|CAB55038.1|  189|Caenorhabditis elegans Hypothetical ...    28   7.9  
AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic avoid...    28   7.9  
AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory cha...    28   7.9  

>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = -2

Query: 458 GGVLKCCKALRPQPTGSRTY--IRTVSSQKSRITFQDASLPSIVFTMVSSDRFSPTTATT 285
           GG  K    L P  T   T+  + TVS+     T    + P+ V T  ++   +PTTAT 
Sbjct: 450 GGANKPTVVLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATP 509

Query: 284 QVNVTKGNLSPSLRGSNLP 228
               T G ++PS   + +P
Sbjct: 510 ---TTVGTMTPSTGTTTVP 525


>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -2

Query: 500  DAWLTQGQLETMDL----GGVLKCCKALRPQPTGSRTYIRTVSSQKSRITFQDASLPSIV 333
            +A +T G+L   DL     GV +C    +  P  +RT +   S ++ ++TF  A    +V
Sbjct: 2397 NAQVTGGRLLFTDLKEDNAGVYRCVAKTKAGPLQTRTVLNVGSGKQDQVTFTVADSLPVV 2456

Query: 332  FTM 324
            +T+
Sbjct: 2457 YTV 2459


>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
            ZC101.2e protein.
          Length = 3375

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -2

Query: 500  DAWLTQGQLETMDL----GGVLKCCKALRPQPTGSRTYIRTVSSQKSRITFQDASLPSIV 333
            +A +T G+L   DL     GV +C    +  P  +RT +   S ++ ++TF  A    +V
Sbjct: 2397 NAQVTGGRLLFTDLKEDNAGVYRCVAKTKAGPLQTRTVLNVGSGKQDQVTFTVADSLPVV 2456

Query: 332  FTM 324
            +T+
Sbjct: 2457 YTV 2459


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = -2

Query: 458 GGVLKCCKALRPQPTGSRTY--IRTVSSQKSRITFQDASLPSIVFTMVSSDRFSPTTAT- 288
           GG  K    L P  T   T+  + TVS+     T    + P+ V T  ++   +PTTAT 
Sbjct: 450 GGANKPTVVLAPPTTPGPTFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPPANPTTATP 509

Query: 287 TQVNVTK--GNLSPSL 246
           T V  +K    +SP L
Sbjct: 510 TTVGTSKQTNTISPHL 525


>Z82264-7|CAB05164.3|  499|Caenorhabditis elegans Hypothetical
           protein C49C3.13 protein.
          Length = 499

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/82 (24%), Positives = 35/82 (42%)
 Frame = -2

Query: 515 STLQLDAWLTQGQLETMDLGGVLKCCKALRPQPTGSRTYIRTVSSQKSRITFQDASLPSI 336
           S L+L+    QGQ + +   G        R  PT +  +I+  +S     T   ++  ++
Sbjct: 198 SLLKLNPGYVQGQFDDIWDCGTNLATPTCRYDPTSTAPHIKYDTSYTCASTTTVSTTSTV 257

Query: 335 VFTMVSSDRFSPTTATTQVNVT 270
             T  ++   +PTT TT    T
Sbjct: 258 TTTKPTTTTTTPTTTTTTPTTT 279


>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 342 KHRIHDGQQRQVLSHNRDDSSKRNKRQ 262
           +HR HDG + Q    +R  +  RN+RQ
Sbjct: 88  RHRNHDGNRHQNQDRSRHHNQDRNRRQ 114


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 342  KHRIHDGQQRQVLSHNRDDSSKRNKRQ 262
            +HR HDG + Q    +R  +  RN+RQ
Sbjct: 932  RHRNHDGNRHQNQDRSRHHNQDRNRRQ 958


>AL117199-2|CAB55041.1|  189|Caenorhabditis elegans Hypothetical
           protein Y43F11A.4 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 732 LRSTALA-KVRVSNNVRFEPHELTYLPRYAEIVSQDHQLRHQL 607
           +RS + A K R   +    P    Y+ +Y E ++  HQ+RH L
Sbjct: 7   IRSNSNAIKARAPASAPKRPTSAEYVKKYTEYLATGHQIRHAL 49


>AL117199-1|CAB55038.1|  189|Caenorhabditis elegans Hypothetical
           protein Y43F11A.1 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 732 LRSTALA-KVRVSNNVRFEPHELTYLPRYAEIVSQDHQLRHQL 607
           +RS + A K R   +    P    Y+ +Y E ++  HQ+RH L
Sbjct: 7   IRSNSNAIKARAPASAPKRPTSAEYVKKYTEYLATGHQIRHAL 49


>AF045639-5|AAC02569.2|  937|Caenorhabditis elegans Osmotic
           avoidance abnormal protein9 protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 216 SYSTG*VRTSQAWRQIAFCYVYLSRRGCGREPVAADHREY 335
           +Y+T   +  +AWRQ     V +  R  G+E +AA   EY
Sbjct: 644 TYTTVIAQAEKAWRQQYAQIVMVLERSVGKERLAASQLEY 683


>AF031408-1|AAB87064.1|  937|Caenorhabditis elegans olfactory
           channel protein.
          Length = 937

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 216 SYSTG*VRTSQAWRQIAFCYVYLSRRGCGREPVAADHREY 335
           +Y+T   +  +AWRQ     V +  R  G+E +AA   EY
Sbjct: 644 TYTTVIAQAEKAWRQQYAQIVMVLERSVGKERLAASQLEY 683


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,395,689
Number of Sequences: 27780
Number of extensions: 349887
Number of successful extensions: 976
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)