Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a05
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    33   0.089
10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572     29   0.83 
08_02_0801 + 21349434-21349438,21349952-21349978,21351175-213512...    28   2.5  
10_08_0912 - 21520088-21520426,21520534-21520674,21521235-215212...    27   5.9  

>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 32.7 bits (71), Expect = 0.089
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +3

Query: 63  MQKLTNLLSNKLLPNTLISKLINVLIKLHATIKFKLFLKSNVLTNV 200
           +  L+NL+   L  N L S+L+ +L KLH+ +  KL++ S + T +
Sbjct: 861 ISSLSNLVRLSLRENYLESELVKILGKLHSLLSLKLYVNSYLGTEL 906


>10_06_0191 - 11631066-11631538,11632011-11632319,11632374-11632572
          Length = 326

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 11/53 (20%), Positives = 31/53 (58%)
 Frame = -1

Query: 187 TLLFKNNLNLMVACNLINTLINFEINVFGKSLLLSKFVNFCIAXQRXGLRFNI 29
           T ++++ L+++V   L+N +  +   + G +++ ++F ++C A ++    F I
Sbjct: 162 TTIYRSKLSMIVLEKLLNKICRYVRIIAGNTVVKARFQDYCKAKKKPARMFGI 214


>08_02_0801 +
           21349434-21349438,21349952-21349978,21351175-21351249,
           21351333-21351369,21351469-21351552,21351821-21351881,
           21351961-21352067,21352162-21352227,21352366-21352461
          Length = 185

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 229 NHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFE 116
           N   FY YA  +  T   K  + + VAC L+N ++  +
Sbjct: 82  NFQDFYPYAFRYCLTEDKKKCIEIPVACELLNLVLGLQ 119


>10_08_0912 -
           21520088-21520426,21520534-21520674,21521235-21521294,
           21521394-21521493,21521591-21521904,21522253-21522621,
           21522993-21523104,21523627-21523787
          Length = 531

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 22/82 (26%), Positives = 42/82 (51%)
 Frame = -1

Query: 307 GDDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTL 128
           G+ + T L  SN      ++++ A++NH     YAIT    LL +    + ++ +  N  
Sbjct: 282 GNGEDTNL--SNTKCTVEVSSISADKNHMPDVSYAITHY-RLLVEQLERVDLSMSETNIK 338

Query: 127 INFEINVFGKSLLLSKFVNFCI 62
           + F INV+  SL++  ++ + I
Sbjct: 339 LAFWINVY-NSLVMHAYLAYGI 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,714,906
Number of Sequences: 37544
Number of extensions: 99048
Number of successful extensions: 203
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)