Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a04
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.58 
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces...    28   1.8  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    27   3.1  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   5.4  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    26   7.2  

>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -1

Query: 771 TLWPPRFKANGSVCALTTPSLN--DMFSF*ASTQTSNTLALKSINFFEYVIFQFCNDPHL 598
           T+ PP     G+     TP  N   + S   S  +S + ++ S++     I  FC D H 
Sbjct: 298 TISPPSANTVGNPSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNSNILSFCKDQHG 357

Query: 597 CKIIE 583
           C+ ++
Sbjct: 358 CRYLQ 362


>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 336

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = -3

Query: 547 ARRQHVRHQAQY*TRIQNASVGPHVCA*QQTANVF-VS*RMVSVATLQSGLSQKRIFDVG 371
           ARRQ  R QA++  R  + S+G +  + Q ++N+F  S R   +       ++K ++D  
Sbjct: 173 ARRQATRLQAKHLRRATSGSLGYNPYSLQNSSNIFSTSSRKGDLPKFSDYSAEKPMYDTI 232

Query: 370 ISARGRVRFGQHSHNRRGANSNSR 299
               G  R G  S  +   +++SR
Sbjct: 233 SEDDGLKRGGSVSKLKPTFSNDSR 256


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 222 DHV-AHSMRDADLEGYFDIIISEGSTVREERSDLVQNSHNAIVDYNLKN 79
           DH  A   RD  + GY D II + S   E   ++ + S+ + +D  +KN
Sbjct: 631 DHCEASHFRDIKMTGYDDEIIQDLSRYIEGNDEIEKESYKSGLDIVMKN 679


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 756 RFKANGSVCALTTPSLNDMFSF*ASTQTSNTL--ALKSINFFEY 631
           R K N ++  + TP  +D+     S+ T+NTL   ++S NF  Y
Sbjct: 286 RKKENVNLNLVKTPKYDDLTKMNLSSSTANTLIKGIQSYNFQNY 329


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 352 HDHVRKSPRQRFAFERDHFVVWQQKPFFKK 441
           H HVR+ P      E D F  W  + +++K
Sbjct: 267 HIHVRRFPISEIPTEEDQFTDWLYQRWYEK 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,569,662
Number of Sequences: 5004
Number of extensions: 78344
Number of successful extensions: 224
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)