Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a04
         (801 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3313|AAF46788.1|  404|Drosophila melanogaster CG13500-P...    31   1.8  
BT012483-1|AAS93754.1|  326|Drosophila melanogaster LD45673p pro...    30   3.2  
AE014296-3442|AAF51653.2|  445|Drosophila melanogaster CG11456-P...    30   3.2  
AY051552-1|AAK92976.1|  418|Drosophila melanogaster GH20109p pro...    29   5.6  
AE014296-1259|AAF50560.2|  418|Drosophila melanogaster CG8560-PA...    29   5.6  
AE014297-1818|AAF55034.1|  289|Drosophila melanogaster CG9624-PA...    29   7.4  
AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA ...    29   9.8  

>AE013599-3313|AAF46788.1|  404|Drosophila melanogaster CG13500-PA
           protein.
          Length = 404

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 742 WICLRLNDAIIKRHVLVLSEY--ADLKYLGFEKYKFF*ICN 626
           W  LRL++  I RHVL+L  +  A   YLG  + ++   CN
Sbjct: 4   WHSLRLSNRYISRHVLLLLRFYLAQFYYLGLMRLRYDESCN 44


>BT012483-1|AAS93754.1|  326|Drosophila melanogaster LD45673p
           protein.
          Length = 326

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 323 KRSKFKFEIRLCMTACRNCTKWVAF*SCGRMAVEIM*HTRCETPIWKAILISLSAKV-PP 147
           K   FKF+    M    +C K  +F SC    +E+    RC   +WKA  + +   V P 
Sbjct: 105 KECPFKFQDATKMELHCSCHKGGSF-SCCECGMELPNWRRCSAHLWKAHQVDVDLLVCPV 163

Query: 146 FEKN 135
           FE N
Sbjct: 164 FECN 167


>AE014296-3442|AAF51653.2|  445|Drosophila melanogaster CG11456-PA
           protein.
          Length = 445

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 323 KRSKFKFEIRLCMTACRNCTKWVAF*SCGRMAVEIM*HTRCETPIWKAILISLSAKV-PP 147
           K   FKF+    M    +C K  +F SC    +E+    RC   +WKA  + +   V P 
Sbjct: 105 KECPFKFQDATKMELHCSCHKGGSF-SCCECGMELPNWRRCSAHLWKAHQVDVDLLVCPV 163

Query: 146 FEKN 135
           FE N
Sbjct: 164 FECN 167


>AY051552-1|AAK92976.1|  418|Drosophila melanogaster GH20109p
           protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 225 YCHTTTRLKRNPFRAIPASCH-TQTNLEFEF 314
           Y HTTTR+ R   + I ++C+ T  N  F+F
Sbjct: 228 YSHTTTRMWRKTRKPISSACYGTDANRNFDF 258


>AE014296-1259|AAF50560.2|  418|Drosophila melanogaster CG8560-PA
           protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 225 YCHTTTRLKRNPFRAIPASCH-TQTNLEFEF 314
           Y HTTTR+ R   + I ++C+ T  N  F+F
Sbjct: 228 YSHTTTRMWRKTRKPISSACYGTDANRNFDF 258


>AE014297-1818|AAF55034.1|  289|Drosophila melanogaster CG9624-PA
           protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -1

Query: 330 ITEEEQIQIRDSFVYDSLQELHEMGCVLVLWSYGSRDHVAHSMRDADLEGYFDIIISEGS 151
           ITEE Q   +     D L+ +H+  C L++   G+   +    R      Y   +++   
Sbjct: 154 ITEELQKCFKGPMELDILRAIHDHDCKLMIIDLGTDVDIKDCQRWIKFRPYIQ-LLALPR 212

Query: 150 TVREERSDLVQN-SHNAIVDYNLKNAFY 70
           T R ERS  V N  H  +V+ +  N+++
Sbjct: 213 TPRMERSLQVLNVFHTYLVEESADNSWH 240


>AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA
            protein.
          Length = 1286

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +2

Query: 182  PSKSASRIECAT*SLLPYDHKTKTQPISCNSCKLSYTNESRI*ICSSSVMRVLSKSNTTT 361
            P+ +  R    T +  P     ++   +C SC  + T  S    C+S       +S TTT
Sbjct: 923  PTTTTPRSTTTTCTSGPTTTTPRSTTTTCTSCPTTTTPRSTTTTCTSCPTTTTPRSTTTT 982

Query: 362  C 364
            C
Sbjct: 983  C 983


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,572,770
Number of Sequences: 53049
Number of extensions: 859002
Number of successful extensions: 2241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2231
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)