Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a03
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    32   0.14 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    31   0.31 
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    27   3.9  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   3.9  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   8.9  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 810 NSTITNWNCKFVQYYDCILYFYNHKFRHDYTIKNINYNKQYLIYS 944
           N++  NW C  ++ +   ++     FR  Y + NI + K   +YS
Sbjct: 183 NTSENNWTCLSIENFGISIHVITKNFREYYKLDNIEHVKDETLYS 227


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
 Frame = +2

Query: 353  NGIPIRGSPHSIASSDVYSPAWVITSFTFGCLKTSACGNHRPVLTFSGIPSTTSRSHFHS 532
            N +P   SPHS + SD  SPA V  S + G         H    T S + +T S +   S
Sbjct: 3679 NKVPSTVSPHSSSISDTKSPATVTISSSSGQF------THSTFSTGSTMHNTVSHATSTS 3732

Query: 533  TLYGSSR---NTLANICVS*RGSFEGGTFVPKL 622
            + + +S    NTLA+   + +  F   + VP L
Sbjct: 3733 SSFTTSHLPTNTLASTFDNSQSIFSSSSGVPGL 3765


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 19/90 (21%), Positives = 41/90 (45%)
 Frame = -3

Query: 375 LPLIGIPFLADQWLNVDNYVHHGMGLYLDAETVTAEEFKAAIVEVIENDKYRSSVLRFRG 196
           L LI  P  ++  +   N +  G  LY+    + +++F+A++ ++ +  +     +  RG
Sbjct: 559 LLLINNPNRSENVIRFCNSLKKG-SLYILGHVIVSDDFQASMDDLRKQQRLWHQFVLDRG 617

Query: 195 LVSDVRLSPAQRVAWWTERLLRPGGAAHMR 106
           + + V L+ A    W    L+   G   +R
Sbjct: 618 IKAFVELTIAPDEVWGIRGLISSAGLGGIR 647


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 393  EAIECGLPLIGIPFLADQWLNVDNYVHHGMGLYLDA 286
            +AI C L  + +PF  D+    + Y    M LY  A
Sbjct: 1141 KAILCNLMALSLPFTQDKLFKANVYFDFAMNLYASA 1176


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 241 DFHNGRFELLSSNGFRIQIQPHAVVNVIVHVQPLI 345
           D HN   EL ++ G R+    +  +  I+ V+PLI
Sbjct: 301 DGHNEHRELRNARGQRLFCSEYGTILEIIQVEPLI 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,642,718
Number of Sequences: 5004
Number of extensions: 75381
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)