Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a03
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   5.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   7.1  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   7.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   9.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   9.3  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 324 NYVHHGMGLYLDAETVTAEEFKAAI 250
           N VH+G+G    ++   A  FKA I
Sbjct: 510 NIVHYGIGFITQSDIELANTFKAII 534


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 118 GAPGPQQALRPPGHALRRGQP 180
           GAPGPQ +      A +RG P
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSP 39


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 103 RAHVGGAPGPQQALRPPGHALRRGQPD 183
           R HV G P P+        AL   QPD
Sbjct: 422 RCHVAGEPLPRVQWLKNDEALNHDQPD 448


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 149 GRSACCGPGAPPTCA 105
           GRSAC  PG  P+ A
Sbjct: 295 GRSACHSPGVYPSTA 309


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 316 NVIVHVQPLISQEWYPDQR*PAFYSLF 396
           NV   V P   Q W    R P F+S++
Sbjct: 395 NVKYQVVPSALQMWSTSLRDPVFFSIY 421


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 316 NVIVHVQPLISQEWYPDQR*PAFYSLF 396
           NV   V P   Q W    R P F+S++
Sbjct: 395 NVKYQVVPSALQMWSTSLRDPVFFSIY 421


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 445 SEDISLREPPSGLDVLRHPLHHVEVPLPQHL 537
           S+DISL   P G+ +    L  +E+ + + L
Sbjct: 109 SDDISLFRGPEGIQINATELQKIELEIRRDL 139


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 316 NVIVHVQPLISQEWYPDQR*PAFYSLF 396
           NV   V P   Q W    R P F+S++
Sbjct: 21  NVKYQVVPSALQMWSTSLRDPVFFSIY 47


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 651 PNTLGDPTTHSHSRFSTSITQ 713
           P T   PTT   +  ST+I+Q
Sbjct: 380 PTTTASPTTEPSTTTSTTISQ 400


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 782 IKALVLCDSGAKNGLNLLSNTR 717
           +K +V C +G  +GL L  NT+
Sbjct: 205 LKNIVACGAGFIDGLGLGDNTK 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 263,932
Number of Sequences: 438
Number of extensions: 6173
Number of successful extensions: 34
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)