Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a02
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    29   0.88 
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    28   1.5  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   6.2  
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    26   8.2  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    26   8.2  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   8.2  

>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 877 NSY*SHYTLGIE-SMYHFNQSVVKFGKLISIVCHK*WNNLLQNEHKLEIL 731
           NS  S Y LGI  S Y  +++V   GKL+ ++    WN  L N  KL I+
Sbjct: 638 NSDVSKYELGIAISGYALDKNV---GKLVELINKAFWNTNLSNTDKLAIM 684


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +1

Query: 247 VDDIVTF---ANLVLRIALHFTQKQIYLVQKQ-AYLYFINYLKYFKNN 378
           VDD V     +N + R    +TQ+Q+  + K+ AY+  + YLK +K N
Sbjct: 447 VDDTVANVLKSNELFRDTDQYTQRQMIEITKENAYIMLMRYLKNYKKN 494


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 689 SCLLPEVWFLFS 724
           SC+LP+VW LFS
Sbjct: 249 SCILPQVWSLFS 260


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 340 LYFINYLKYFKNNLKR--CSKPTHLFI-FCCLCLKLSIYFSGDLFQIKSPQKCF 492
           ++F   ++ F N +K    SK T L + +    L  + YF+G+ F    PQ CF
Sbjct: 122 IFFRYIVRQFVNGIKSKYLSKETFLNLDYIDNHLASNEYFAGEQFTAADPQMCF 175


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 262 LQYHLPMCFNSSCVNIFNYXXXXXXXXXX*MDTCPFVNRLMFCMC 128
           L+Y    C N   +NI N            +  CP++NRL+   C
Sbjct: 138 LEYISDNCPNLKALNIGNCGLVEDTGMVQIIKRCPYLNRLIIPNC 182


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 570  SQAQPSWCLVSVNYFKHSS 514
            ++  PS+CLV +N++ H S
Sbjct: 952  TEGDPSYCLVLLNFYNHFS 970


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,446,885
Number of Sequences: 5004
Number of extensions: 71383
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)