Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc19a02
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948     30   2.1  
06_01_0256 - 1905767-1905901,1906375-1906407,1906489-1906585,190...    29   4.9  

>05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948
          Length = 508

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -3

Query: 682 KIQFFLITSQILVIVSSC---DEYGFW*PLHQVGFSTLGNLTGAAKLVPSVSKL 530
           K+++  ++ Q   +V S    DE G W   HQV  STLG   G+ K +P +  +
Sbjct: 356 KLRYVEVSDQEPFVVMSFTLDDESGHWTLDHQVALSTLGAKGGSPKGIPYIGAI 409


>06_01_0256 -
           1905767-1905901,1906375-1906407,1906489-1906585,
           1907080-1907158,1907373-1907454,1907649-1907707,
           1907821-1907893
          Length = 185

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 408 IYFLLPMPETLHIFFRGSFPNQVTSKMFPKSYII 509
           IYFL P+ E  +IFF    P ++ S +   S +I
Sbjct: 89  IYFLQPLKEKAYIFFSSPIPKELVSYIKNDSSVI 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,257,803
Number of Sequences: 37544
Number of extensions: 357866
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)