Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18n02
(320 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 28 1.7
AF039047-6|AAB94226.1| 186|Caenorhabditis elegans Hypothetical ... 28 1.7
AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical... 27 3.0
AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine sy... 27 3.0
AF016685-6|AAG24147.1| 338|Caenorhabditis elegans Seven tm rece... 26 5.3
Z81527-16|CAB04280.1| 915|Caenorhabditis elegans Hypothetical p... 26 7.0
Z81527-15|CAB04279.1| 927|Caenorhabditis elegans Hypothetical p... 26 7.0
Z81110-8|CAB03263.1| 915|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z81110-7|CAB03262.1| 927|Caenorhabditis elegans Hypothetical pr... 26 7.0
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 26 7.0
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 26 7.0
Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 25 9.2
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 25 9.2
AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine... 25 9.2
AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine... 25 9.2
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 25 9.2
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 178 LCSEGFEFDPNVKDCVPISDYGCTAN 255
L + F F+P+ + C P YGC+ N
Sbjct: 377 LTIQRFYFNPSTQKCQPFHYYGCSGN 402
>AF039047-6|AAB94226.1| 186|Caenorhabditis elegans Hypothetical
protein K11D12.6 protein.
Length = 186
Score = 27.9 bits (59), Expect = 1.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 193 FEFDPNVKDCVPISDYGCTANQ 258
+ +DP VK C+P GC N+
Sbjct: 38 YHYDPTVKRCLPFGYTGCGGNE 59
>AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical
protein Y46G5A.19 protein.
Length = 314
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 145 MCVGINH-RLELLCSEGFEFDPNVKD 219
M G +H +L+L C +GFEF N K+
Sbjct: 155 MSCGFSHPKLDLFCGDGFEFLKNHKN 180
>AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine
synthase protein.
Length = 314
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 145 MCVGINH-RLELLCSEGFEFDPNVKD 219
M G +H +L+L C +GFEF N K+
Sbjct: 155 MSCGFSHPKLDLFCGDGFEFLKNHKN 180
>AF016685-6|AAG24147.1| 338|Caenorhabditis elegans Seven tm
receptor protein 84 protein.
Length = 338
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 94 RPIGVHFPHPTKCNAFYMCVGINHRLELLC 183
+PIGV C+ F++C+GI + C
Sbjct: 197 KPIGVWLTMMALCSCFFICLGIMGYFGMQC 226
>Z81527-16|CAB04280.1| 915|Caenorhabditis elegans Hypothetical
protein T01D3.6b protein.
Length = 915
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 148 CVGINHRLELLCSEGFEFDPNVKDC 222
C NH+L +C G+ N +DC
Sbjct: 157 CYVANHQLNCICKPGYTARRNGRDC 181
>Z81527-15|CAB04279.1| 927|Caenorhabditis elegans Hypothetical
protein T01D3.6a protein.
Length = 927
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 148 CVGINHRLELLCSEGFEFDPNVKDC 222
C NH+L +C G+ N +DC
Sbjct: 157 CYVANHQLNCICKPGYTARRNGRDC 181
>Z81110-8|CAB03263.1| 915|Caenorhabditis elegans Hypothetical
protein T01D3.6b protein.
Length = 915
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 148 CVGINHRLELLCSEGFEFDPNVKDC 222
C NH+L +C G+ N +DC
Sbjct: 157 CYVANHQLNCICKPGYTARRNGRDC 181
>Z81110-7|CAB03262.1| 927|Caenorhabditis elegans Hypothetical
protein T01D3.6a protein.
Length = 927
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 148 CVGINHRLELLCSEGFEFDPNVKDC 222
C NH+L +C G+ N +DC
Sbjct: 157 CYVANHQLNCICKPGYTARRNGRDC 181
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 118 HPTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISDYGCTAN 255
H + +CV + +E C GF + K C IS+ C++N
Sbjct: 382 HENNGDCSQICVNLAGSVECQCKPGFRLMKDRKTCEDISE--CSSN 425
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 118 HPTKCNAFYMCVGINHRLELLCSEGFEFDPNVKDCVPISDYGCTAN 255
H + +CV + +E C GF + K C IS+ C++N
Sbjct: 382 HENNGDCSQICVNLAGSVECQCKPGFRLMKDRKTCEDISE--CSSN 425
>Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical
protein R06A4.10b protein.
Length = 511
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 294 KIYLINFIFIFVLVS 250
+I+LI F+FIFVL S
Sbjct: 477 RIFLITFLFIFVLTS 491
>Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical
protein R06A4.10a protein.
Length = 514
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 294 KIYLINFIFIFVLVS 250
+I+LI F+FIFVL S
Sbjct: 480 RIFLITFLFIFVLTS 494
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 148 CVGINHRLELLCSEGFEFDPNVKDCVPISDYGCTAN 255
CV +H+ +LLC + +F N K C P + ++N
Sbjct: 125 CVRNSHQPQLLCDKTCQFTCN-KACTPSTSTSSSSN 159
>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
protein B0393.5 protein.
Length = 1106
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 148 CVGINHRLELLCSEGFEFDPNVKDCVPISD 237
C+ + E LC +G+E DP+ +C +++
Sbjct: 463 CINKDGTFECLCKDGYEGDPS-SECRDVNE 491
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = +1
Query: 112 FPHPTKCNAFYMCVGINHRLELLCSEGF 195
+PH C+ C+ + E C++GF
Sbjct: 1584 YPHLNDCHQNAACIDLEEGYECKCNQGF 1611
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = +1
Query: 112 FPHPTKCNAFYMCVGINHRLELLCSEGF 195
+PH C+ C+ + E C++GF
Sbjct: 2168 YPHLNDCHQNAACIDLEEGYECKCNQGF 2195
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = +1
Query: 112 FPHPTKCNAFYMCVGINHRLELLCSEGF 195
+PH C+ C+ + E C++GF
Sbjct: 1584 YPHLNDCHQNAACIDLEEGYECKCNQGF 1611
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = +1
Query: 112 FPHPTKCNAFYMCVGINHRLELLCSEGF 195
+PH C+ C+ + E C++GF
Sbjct: 2168 YPHLNDCHQNAACIDLEEGYECKCNQGF 2195
>AY523516-1|AAR98638.1| 459|Caenorhabditis elegans acetylcholine
receptor alternativevariant b protein.
Length = 459
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 294 KIYLINFIFIFVLVS 250
+I+LI F+FIFVL S
Sbjct: 425 RIFLITFLFIFVLTS 439
>AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine
receptor 20 (63.9kD) alternative variant a protein.
Length = 553
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -3
Query: 294 KIYLINFIFIFVLVS 250
+I+LI F+FIFVL S
Sbjct: 519 RIFLITFLFIFVLTS 533
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = +1
Query: 112 FPHPTKCNAFYMCVGINHRLELLCSEGF 195
+PH C+ C+ + E C++GF
Sbjct: 2168 YPHLNDCHQNAACIDLEEGYECKCNQGF 2195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,475,500
Number of Sequences: 27780
Number of extensions: 71905
Number of successful extensions: 259
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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