Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18m22
         (186 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    46   7e-07
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    24   3.0  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    23   4.0  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    23   4.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    23   4.0  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    23   5.3  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    23   5.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    23   7.0  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    22   9.3  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    22   9.3  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 46.0 bits (104), Expect = 7e-07
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
 Frame = -2

Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWV--RDAHRKHYSI 45
           M +HK+F  K+KLAK  +QNRPIPQW+  R  +  HY++
Sbjct: 1   MPSHKSFRTKQKLAKAARQNRPIPQWIRLRTGNTVHYNM 39



 Score = 29.5 bits (63), Expect = 0.061
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 70 MRTGNTIRYNR*EGVXWRRTKL 5
          +RTGNT+ YN  +   WRRTKL
Sbjct: 29 LRTGNTVHYNM-KRRHWRRTKL 49


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 35  LAVISNSVSCAHPLPTEEWVCFV 103
           +A++ + V  A  LPTE W  F+
Sbjct: 250 VALMKDDVGDAEKLPTENWFDFI 272


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 106 SFLANLRLIINVLWADILNNQVVKTKC 186
           +F   LR I++  W+D++  Q+  T C
Sbjct: 250 NFSTELRKIVSKKWSDVVPFQLPATYC 276


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 143 KTFIIKRKLAKKLKQNRPIPQW 78
           +T  +K+KL K    NRP+P W
Sbjct: 18  RTITVKQKLGK----NRPLPGW 35


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 151  RPIRRLLLSANWPKS*NKTD 92
            RP++ +L   N PKS  K D
Sbjct: 1791 RPVKNVLFETNVPKSLRKVD 1810


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 103 FSFLANLRLIINVLWADILNNQVV 174
           + F  ++ +IIN  W D  N  VV
Sbjct: 256 YDFPEDMNMIINCEWCDFDNQHVV 279


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/37 (21%), Positives = 16/37 (43%)
 Frame = +2

Query: 2   LELCPSPXDALLAVISNSVSCAHPLPTEEWVCFVSAF 112
           +++ P P D L  ++       H      ++C+ S F
Sbjct: 65  IDVAPKPEDELSGIVKARYLTEHSSRISFYICYFSIF 101


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 105 QLFGQFALNNKRLMGRHFEQSSCQNKV 185
           Q+  Q  +++K LMG H E +   N +
Sbjct: 401 QIVAQTHIDSKSLMGLHIELAPAANDI 427


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 83  EEWVCFVSAFWPI 121
           ++W+  VS FWP+
Sbjct: 187 KQWINHVSDFWPL 199


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 136 LLLSANWPKS*NKTDPFLSG 77
           LL+  NW  +  K  PF++G
Sbjct: 203 LLMDKNWDMTVQKVYPFING 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 747,942
Number of Sequences: 5004
Number of extensions: 11295
Number of successful extensions: 27
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)