Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18m22
         (186 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944           51   2e-07
02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254     51   2e-07
02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907     51   2e-07
02_04_0610 + 24335153-24337724,24337835-24338256                       27   2.8  
11_06_0478 + 24073295-24074172,24074790-24075090                       26   4.9  
07_03_0777 + 21450236-21450286,21450432-21450830,21450968-214511...    25   8.5  
04_04_0930 - 29480700-29480853,29481007-29483036                       25   8.5  
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003...    25   8.5  

>06_01_0572 - 4044610-4044658,4044754-4044857,4044942-4044944
          Length = 51

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 20/28 (71%), Positives = 25/28 (89%)
 Frame = -2

Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
           M +HKTF IK+KLAKK++QNRPIP W+R
Sbjct: 1   MPSHKTFQIKKKLAKKMRQNRPIPYWIR 28



 Score = 30.3 bits (65), Expect = 0.23
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = -3

Query: 70 MRTGNTIRYNR*EGVXWRRTKL 5
          MRT NTIRYN  +   WRRTKL
Sbjct: 29 MRTDNTIRYNA-KRRHWRRTKL 49


>02_05_1078 + 33946902-33946904,33947006-33947109,33947206-33947254
          Length = 51

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 20/28 (71%), Positives = 25/28 (89%)
 Frame = -2

Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
           M +HKTF IK+KLAKK++QNRPIP W+R
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIR 28



 Score = 30.3 bits (65), Expect = 0.23
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = -3

Query: 70 MRTGNTIRYNR*EGVXWRRTKL 5
          MRT NTIRYN  +   WRRTKL
Sbjct: 29 MRTDNTIRYNA-KRRHWRRTKL 49


>02_05_1076 + 33932543-33932545,33932643-33932746,33932859-33932907
          Length = 51

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 20/28 (71%), Positives = 25/28 (89%)
 Frame = -2

Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
           M +HKTF IK+KLAKK++QNRPIP W+R
Sbjct: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIR 28



 Score = 30.3 bits (65), Expect = 0.23
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = -3

Query: 70 MRTGNTIRYNR*EGVXWRRTKL 5
          MRT NTIRYN  +   WRRTKL
Sbjct: 29 MRTDNTIRYNA-KRRHWRRTKL 49


>02_04_0610 + 24335153-24337724,24337835-24338256
          Length = 997

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 32  LLAVISNSVSCAHPLPTE 85
           LL+V+  ++SC HP+P E
Sbjct: 940 LLSVVQVALSCTHPIPRE 957


>11_06_0478 + 24073295-24074172,24074790-24075090
          Length = 392

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -3

Query: 172 QLDCSKCRPIRRLLLSANWPKS*NKTDPFLS 80
           QL C  C  +    LSA WP    K D F S
Sbjct: 207 QLFCLMCWQVEYQYLSAEWPPPSYKIDAFSS 237


>07_03_0777 +
           21450236-21450286,21450432-21450830,21450968-21451132,
           21451527-21451790,21451963-21452172,21452300-21452539,
           21452640-21452777
          Length = 488

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2

Query: 98  NRPIPQWVRD 69
           N PIPQWVRD
Sbjct: 102 NIPIPQWVRD 111


>04_04_0930 - 29480700-29480853,29481007-29483036
          Length = 727

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 97  FCFSFLANLRLII 135
           FCFSF+A+L LII
Sbjct: 9   FCFSFVASLALII 21


>02_05_0046 -
           25398412-25398594,25399022-25399060,25399896-25400360,
           25400758-25400816,25400920-25401748,25402554-25402898,
           25402973-25403435,25403537-25403640,25403692-25403901,
           25404933-25405088,25405774-25406052,25406237-25406986,
           25407141-25407232,25407977-25408361,25408672-25408752,
           25409196-25409354,25409399-25409506,25409604-25409666,
           25409764-25409835,25409932-25410366
          Length = 1758

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 94  LFCFSFLANLRLIINVLWADILNNQV 171
           ++ F F  N   I++V+W +IL  ++
Sbjct: 286 VYLFEFHGNAHAIVSVIWTNILGKRL 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,796,795
Number of Sequences: 37544
Number of extensions: 72193
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)