Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18m22
(186 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57846-1|AAB02265.1| 51|Homo sapiens ribosomal protein L39 pro... 53 2e-07
D79205-1|BAA11465.1| 51|Homo sapiens ribosomal protein L39 pro... 53 2e-07
BC070205-1|AAH70205.1| 51|Homo sapiens ribosomal protein L39 p... 53 2e-07
BC001019-1|AAH01019.1| 51|Homo sapiens ribosomal protein L39 p... 53 2e-07
AB061835-1|BAB79473.1| 51|Homo sapiens ribosomal protein L39 p... 53 2e-07
L05096-1|AAC15859.1| 51|Homo sapiens ribosomal protein L39 pro... 52 3e-07
BC012328-1|AAH12328.1| 51|Homo sapiens ribosomal protein L39-l... 52 3e-07
AF548529-1|AAN52397.1| 51|Homo sapiens ribosomal protein L39-2... 52 3e-07
AB063610-1|BAC19837.1| 51|Homo sapiens ribosomal protein L39-l... 52 3e-07
AB063607-1|BAC19834.1| 29|Homo sapiens ribosomal protein L39-l... 52 3e-07
AB209077-1|BAD92314.1| 70|Homo sapiens ribosomal protein L39 v... 51 6e-07
AB046411-1|BAB21257.1| 17|Homo sapiens ribosomal protein L39 p... 28 4.6
X83441-1|CAA58467.1| 844|Homo sapiens DNA ligase IV protein. 27 8.1
BC037491-1|AAH37491.1| 911|Homo sapiens ligase IV, DNA, ATP-dep... 27 8.1
AL157762-1|CAH70629.1| 911|Homo sapiens ligase IV, DNA, ATP-dep... 27 8.1
AF479264-1|AAL77435.1| 844|Homo sapiens ligase IV, DNA, ATP-dep... 27 8.1
>U57846-1|AAB02265.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
MS+HKTF IKR LAKK KQNRPIPQW+R
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIR 28
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 70 MRTGNTIRYNR*EGVXWRRTKL 5
M+TGN IRYN + WRRTKL
Sbjct: 29 MKTGNKIRYNS-KRRHWRRTKL 49
>D79205-1|BAA11465.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
MS+HKTF IKR LAKK KQNRPIPQW+R
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIR 28
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 70 MRTGNTIRYNR*EGVXWRRTKL 5
M+TGN IRYN + WRRTKL
Sbjct: 29 MKTGNKIRYNS-KRRHWRRTKL 49
>BC070205-1|AAH70205.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
MS+HKTF IKR LAKK KQNRPIPQW+R
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIR 28
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 70 MRTGNTIRYNR*EGVXWRRTKL 5
M+TGN IRYN + WRRTKL
Sbjct: 29 MKTGNKIRYNS-KRRHWRRTKL 49
>BC001019-1|AAH01019.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
MS+HKTF IKR LAKK KQNRPIPQW+R
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIR 28
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 70 MRTGNTIRYNR*EGVXWRRTKL 5
M+TGN IRYN + WRRTKL
Sbjct: 29 MKTGNKIRYNS-KRRHWRRTKL 49
>AB061835-1|BAB79473.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
MS+HKTF IKR LAKK KQNRPIPQW+R
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIR 28
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 70 MRTGNTIRYNR*EGVXWRRTKL 5
M+TGN IRYN + WRRTKL
Sbjct: 29 MKTGNKIRYNS-KRRHWRRTKL 49
>L05096-1|AAC15859.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
MS+HKTF IKR LAKK KQNRPIPQW++
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQ 28
>BC012328-1|AAH12328.1| 51|Homo sapiens ribosomal protein L39-like
protein.
Length = 51
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
MS+HKTF IKR LAKK KQNRPIPQW++
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQ 28
>AF548529-1|AAN52397.1| 51|Homo sapiens ribosomal protein L39-2
protein.
Length = 51
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
MS+HKTF IKR LAKK KQNRPIPQW++
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQ 28
>AB063610-1|BAC19837.1| 51|Homo sapiens ribosomal protein L39-like
protein.
Length = 51
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
MS+HKTF IKR LAKK KQNRPIPQW++
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQ 28
>AB063607-1|BAC19834.1| 29|Homo sapiens ribosomal protein L39-like
protein.
Length = 29
Score = 52.0 bits (119), Expect = 3e-07
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
MS+HKTF IKR LAKK KQNRPIPQW++
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQ 28
>AB209077-1|BAD92314.1| 70|Homo sapiens ribosomal protein L39
variant protein.
Length = 70
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/28 (78%), Positives = 25/28 (89%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
MS+HKTF IK+ LAKK KQNRPIPQW+R
Sbjct: 20 MSSHKTFKIKQFLAKKQKQNRPIPQWIR 47
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 70 MRTGNTIRYNR*EGVXWRRTKL 5
M+TGN IRYN + W+RTKL
Sbjct: 48 MKTGNKIRYNS-KRRHWKRTKL 68
>AB046411-1|BAB21257.1| 17|Homo sapiens ribosomal protein L39
protein.
Length = 17
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKK 108
MS+HKTF IKR LAKK
Sbjct: 1 MSSHKTFRIKRFLAKK 16
>X83441-1|CAA58467.1| 844|Homo sapiens DNA ligase IV protein.
Length = 844
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 117 GQKAETKQTHSSVGKGCAQETLFDITAKRA 28
G+K T S VG GC + L+D+ K A
Sbjct: 427 GEKPSVFHTLSRVGSGCTMKELYDLGLKLA 456
>BC037491-1|AAH37491.1| 911|Homo sapiens ligase IV, DNA,
ATP-dependent protein.
Length = 911
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 117 GQKAETKQTHSSVGKGCAQETLFDITAKRA 28
G+K T S VG GC + L+D+ K A
Sbjct: 494 GEKPSVFHTLSRVGSGCTMKELYDLGLKLA 523
>AL157762-1|CAH70629.1| 911|Homo sapiens ligase IV, DNA,
ATP-dependent protein.
Length = 911
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 117 GQKAETKQTHSSVGKGCAQETLFDITAKRA 28
G+K T S VG GC + L+D+ K A
Sbjct: 494 GEKPSVFHTLSRVGSGCTMKELYDLGLKLA 523
>AF479264-1|AAL77435.1| 844|Homo sapiens ligase IV, DNA,
ATP-dependent protein.
Length = 844
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 117 GQKAETKQTHSSVGKGCAQETLFDITAKRA 28
G+K T S VG GC + L+D+ K A
Sbjct: 427 GEKPSVFHTLSRVGSGCTMKELYDLGLKLA 456
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,193,231
Number of Sequences: 237096
Number of extensions: 425606
Number of successful extensions: 878
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 76,859,062
effective HSP length: 41
effective length of database: 67,138,126
effective search space used: 1342762520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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