Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18m22
(186 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071712-1|AAL49334.1| 51|Drosophila melanogaster RH27094p pro... 52 1e-07
AF012422-1|AAB65802.1| 51|Drosophila melanogaster ribosomal pr... 52 1e-07
AE013599-3798|AAF47154.1| 51|Drosophila melanogaster CG3997-PA... 52 1e-07
AF175689-1|AAD51842.1| 1048|Drosophila melanogaster heparan sulf... 29 1.1
AE014296-1120|AAF50658.1| 1048|Drosophila melanogaster CG8339-PA... 29 1.1
BT001349-1|AAN71104.1| 644|Drosophila melanogaster AT24616p pro... 26 6.0
AY089363-1|AAL90101.1| 490|Drosophila melanogaster AT18617p pro... 26 6.0
AE014134-627|AAN10374.1| 612|Drosophila melanogaster CG8851-PB,... 26 6.0
AE014134-626|AAF51093.2| 644|Drosophila melanogaster CG8851-PA,... 26 6.0
>AY071712-1|AAL49334.1| 51|Drosophila melanogaster RH27094p
protein.
Length = 51
Score = 52.0 bits (119), Expect = 1e-07
Identities = 22/28 (78%), Positives = 26/28 (92%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
M+AHK+F IK+KLAKKLKQNR +PQWVR
Sbjct: 1 MAAHKSFRIKQKLAKKLKQNRSVPQWVR 28
Score = 33.9 bits (74), Expect = 0.030
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = -3
Query: 70 MRTGNTIRYNR*EGVXWRRTKLK 2
+RTGNTIRYN + WRRTKLK
Sbjct: 29 LRTGNTIRYNA-KRRHWRRTKLK 50
>AF012422-1|AAB65802.1| 51|Drosophila melanogaster ribosomal
protein 46 protein.
Length = 51
Score = 52.0 bits (119), Expect = 1e-07
Identities = 22/28 (78%), Positives = 26/28 (92%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
M+AHK+F IK+KLAKKLKQNR +PQWVR
Sbjct: 1 MAAHKSFRIKQKLAKKLKQNRSVPQWVR 28
Score = 31.5 bits (68), Expect = 0.16
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = -3
Query: 70 MRTGNTIRYNR*EGVXWRRTKLK 2
+ TGNTIRYN + WRRTKLK
Sbjct: 29 LATGNTIRYNA-KRRHWRRTKLK 50
>AE013599-3798|AAF47154.1| 51|Drosophila melanogaster CG3997-PA
protein.
Length = 51
Score = 52.0 bits (119), Expect = 1e-07
Identities = 22/28 (78%), Positives = 26/28 (92%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
M+AHK+F IK+KLAKKLKQNR +PQWVR
Sbjct: 1 MAAHKSFRIKQKLAKKLKQNRSVPQWVR 28
Score = 33.9 bits (74), Expect = 0.030
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = -3
Query: 70 MRTGNTIRYNR*EGVXWRRTKLK 2
+RTGNTIRYN + WRRTKLK
Sbjct: 29 LRTGNTIRYNA-KRRHWRRTKLK 50
>AF175689-1|AAD51842.1| 1048|Drosophila melanogaster heparan sulfate
N-deacetylase/N-sulfotransferase homolog protein.
Length = 1048
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -2
Query: 146 HKTFIIKRKLAKKLKQNRPIPQWVRD 69
H T ++K L KKL +RPIPQW++D
Sbjct: 1020 HNTALVK--LLKKLG-SRPIPQWLKD 1042
>AE014296-1120|AAF50658.1| 1048|Drosophila melanogaster CG8339-PA
protein.
Length = 1048
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -2
Query: 146 HKTFIIKRKLAKKLKQNRPIPQWVRD 69
H T ++K L KKL +RPIPQW++D
Sbjct: 1020 HNTALVK--LLKKLG-SRPIPQWLKD 1042
>BT001349-1|AAN71104.1| 644|Drosophila melanogaster AT24616p
protein.
Length = 644
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 146 HKTFIIKRKLAKKLKQNRPIPQWVRDAHRKHYSI*PLRGRXLEKDK 9
H ++ K+ KLK +P+ +RD H K+ ++ +R L DK
Sbjct: 398 HDIDSLRSKIDNKLKSVSHLPKMMRDEHSKYETV--MRENCLLADK 441
>AY089363-1|AAL90101.1| 490|Drosophila melanogaster AT18617p
protein.
Length = 490
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 146 HKTFIIKRKLAKKLKQNRPIPQWVRDAHRKHYSI*PLRGRXLEKDK 9
H ++ K+ KLK +P+ +RD H K+ ++ +R L DK
Sbjct: 244 HDIDSLRSKIDNKLKSVSHLPKMMRDEHSKYETV--MRENCLLADK 287
>AE014134-627|AAN10374.1| 612|Drosophila melanogaster CG8851-PB,
isoform B protein.
Length = 612
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 146 HKTFIIKRKLAKKLKQNRPIPQWVRDAHRKHYSI*PLRGRXLEKDK 9
H ++ K+ KLK +P+ +RD H K+ ++ +R L DK
Sbjct: 398 HDIDSLRSKIDNKLKSVSHLPKMMRDEHSKYETV--MRENCLLADK 441
>AE014134-626|AAF51093.2| 644|Drosophila melanogaster CG8851-PA,
isoform A protein.
Length = 644
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 146 HKTFIIKRKLAKKLKQNRPIPQWVRDAHRKHYSI*PLRGRXLEKDK 9
H ++ K+ KLK +P+ +RD H K+ ++ +R L DK
Sbjct: 398 HDIDSLRSKIDNKLKSVSHLPKMMRDEHSKYETV--MRENCLLADK 441
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,075,567
Number of Sequences: 53049
Number of extensions: 126522
Number of successful extensions: 294
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 24,988,368
effective HSP length: 42
effective length of database: 22,760,310
effective search space used: 432445890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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