Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18m22
(186 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53148-4|AAB37070.1| 51|Caenorhabditis elegans Ribosomal prote... 48 1e-06
AF303271-1|AAG50229.1| 51|Caenorhabditis elegans ribosomal pro... 48 1e-06
AF040655-8|AAB95047.1| 632|Caenorhabditis elegans Hypothetical ... 27 2.3
U29082-7|AAA68404.3| 319|Caenorhabditis elegans Hypothetical pr... 26 4.1
AF068709-4|AAC19253.2| 297|Caenorhabditis elegans Serpentine re... 25 7.1
AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholin... 25 7.1
Z93778-8|CAB07848.4| 437|Caenorhabditis elegans Hypothetical pr... 25 9.4
U95181-1|AAD00776.1| 437|Caenorhabditis elegans 2,5 dihydroxyph... 25 9.4
AL034364-5|CAA22255.4| 437|Caenorhabditis elegans Hypothetical ... 25 9.4
AF136150-1|AAF61419.1| 437|Caenorhabditis elegans homogentisate... 25 9.4
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ... 25 9.4
>U53148-4|AAB37070.1| 51|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 39 protein.
Length = 51
Score = 47.6 bits (108), Expect = 1e-06
Identities = 22/28 (78%), Positives = 23/28 (82%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
MSA K IKRKLAKK KQNRP+PQWVR
Sbjct: 1 MSALKKSFIKRKLAKKQKQNRPMPQWVR 28
Score = 31.5 bits (68), Expect = 0.082
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -3
Query: 70 MRTGNTIRYNR*EGVXWRRTKLK 2
M+TGNT++YN + WRRTKLK
Sbjct: 29 MKTGNTMKYNA-KRRHWRRTKLK 50
>AF303271-1|AAG50229.1| 51|Caenorhabditis elegans ribosomal
protein L39 protein.
Length = 51
Score = 47.6 bits (108), Expect = 1e-06
Identities = 22/28 (78%), Positives = 23/28 (82%)
Frame = -2
Query: 155 MSAHKTFIIKRKLAKKLKQNRPIPQWVR 72
MSA K IKRKLAKK KQNRP+PQWVR
Sbjct: 1 MSALKKSFIKRKLAKKQKQNRPMPQWVR 28
Score = 31.5 bits (68), Expect = 0.082
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = -3
Query: 70 MRTGNTIRYNR*EGVXWRRTKLK 2
M+TGNT++YN + WRRTKLK
Sbjct: 29 MKTGNTMKYNA-KRRHWRRTKLK 50
>AF040655-8|AAB95047.1| 632|Caenorhabditis elegans Hypothetical
protein T24E12.10 protein.
Length = 632
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 128 KRKLAKKLKQNRPIPQWVRDAHR 60
KRK+ KK K+N P+P + R A R
Sbjct: 119 KRKIQKK-KKNIPVPTYTRSARR 140
>U29082-7|AAA68404.3| 319|Caenorhabditis elegans Hypothetical
protein C14F5.4 protein.
Length = 319
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 185 HFV-LTT*LFKMSAHKTFIIKRKLAKKLKQNRPIPQWVRDAHR 60
HF +T L S+ I +L +K ++ +P+P + + HR
Sbjct: 21 HFAGMTDPLIAFSSTTELITASELMQKCREKKPVPATLEELHR 63
>AF068709-4|AAC19253.2| 297|Caenorhabditis elegans Serpentine
receptor, class t protein26 protein.
Length = 297
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 85 GMGLFCFSFLANLRLIIN 138
G+GL+C S L N+ L++N
Sbjct: 95 GLGLWCCSCLLNILLLVN 112
>AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholine
receptor protein 25 protein.
Length = 544
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 35 LAVISNSVSCAHPLPTEEWVCFVSAFWPIC 124
+ + N V+ P PT E V F+SAF+ +C
Sbjct: 274 ICIFQNYVAELSP-PTSEAVPFLSAFFAVC 302
>Z93778-8|CAB07848.4| 437|Caenorhabditis elegans Hypothetical
protein W06D4.1 protein.
Length = 437
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 71 PLPTEEWVCFVSAFWPIC 124
PLPT+E V FV + +C
Sbjct: 106 PLPTKEGVTFVDNLYTVC 123
>U95181-1|AAD00776.1| 437|Caenorhabditis elegans 2,5
dihydroxyphenylacetate oxidase protein.
Length = 437
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 71 PLPTEEWVCFVSAFWPIC 124
PLPT+E V FV + +C
Sbjct: 106 PLPTKEGVTFVDNLYTVC 123
>AL034364-5|CAA22255.4| 437|Caenorhabditis elegans Hypothetical
protein W06D4.1 protein.
Length = 437
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 71 PLPTEEWVCFVSAFWPIC 124
PLPT+E V FV + +C
Sbjct: 106 PLPTKEGVTFVDNLYTVC 123
>AF136150-1|AAF61419.1| 437|Caenorhabditis elegans homogentisate
1,2-dioxygenase protein.
Length = 437
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 71 PLPTEEWVCFVSAFWPIC 124
PLPT+E V FV + +C
Sbjct: 106 PLPTKEGVTFVDNLYTVC 123
>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
protein F52C12.4 protein.
Length = 1635
Score = 24.6 bits (51), Expect = 9.4
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +2
Query: 44 ISNSVSCAHPLPTEEWV 94
+S++ SC+HP+P E ++
Sbjct: 374 MSSTPSCSHPVPIERYI 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,192,464
Number of Sequences: 27780
Number of extensions: 65690
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -