Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18m22
         (186 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    20   2.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   4.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   4.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    19   7.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                19   7.2  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +3

Query: 63  VRIPYPLRNGSVLFQLFGQFALNNKRLMGRHFE 161
           +++P    N + L ++ G+F L  +   G H E
Sbjct: 284 IKLPKLAANRAKLEEIAGKFNLQVRGTRGEHTE 316


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 61  LCASLTH*GMGLFCFSFLANLRLI 132
           LC S+ +   G+F  ++L N+  I
Sbjct: 358 LCPSMANYDRGVFYKNYLLNVSFI 381


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 61  LCASLTH*GMGLFCFSFLANLRLI 132
           LC S+ +   G+F  ++L N+  I
Sbjct: 448 LCPSMANYDRGVFYKNYLLNVSFI 471


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 9/48 (18%), Positives = 20/48 (41%)
 Frame = +3

Query: 42  LYRIVFPVRIPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCQNKV 185
           +Y+    + + Y   +    F  FG +  +   +  RH  Q+   N++
Sbjct: 140 IYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYTVDLRHLAQTEDSNQI 187


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 107 LKQNRPIP 84
           +KQNRP P
Sbjct: 226 IKQNRPTP 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,461
Number of Sequences: 438
Number of extensions: 981
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used:  2567700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)