Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18m21
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 174 1e-44
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 31 0.099
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 30 0.23
SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc... 29 0.53
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.1
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 27 2.1
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 2.8
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.8
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 3.7
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 8.6
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 8.6
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 174 bits (423), Expect = 1e-44
Identities = 86/166 (51%), Positives = 119/166 (71%), Gaps = 2/166 (1%)
Frame = -3
Query: 561 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 388
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 387 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 208
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 207 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKGG 70
++AILED+VFP EI+GKR R DG + IKV LD T+++K G
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLG 169
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 31.5 bits (68), Expect = 0.099
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -3
Query: 216 TSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKGGHLPVCIQE 46
T + D + E ++ + V K++ ++DG +++ + H GG+ PV I E
Sbjct: 18 TEIVDHVSEKVITNGKNVNKKVNAEVDGKSMVEKVKTHEENAEDYHYGGYHPVYIGE 74
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 30.3 bits (65), Expect = 0.23
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -3
Query: 312 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 133
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 132 SQLIKVHLD-KNQQTTIEHK 76
S ++ LD K+ Q EHK
Sbjct: 1651 SYILNPSLDLKHTQEMFEHK 1670
>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 126
Score = 29.1 bits (62), Expect = 0.53
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = -3
Query: 255 VANKQKRPRSRTLTSVYDA---ILEDLVFPAEIVGKRIRVKLDGSQLI--KVHLDKNQQT 91
V + R +TSVY +L + V + G V +D S+++ K+HLDK+++
Sbjct: 57 VIRGSNKGREGKITSVYRKKFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKD 116
Query: 90 TIEHKGG 70
I KGG
Sbjct: 117 LIVRKGG 123
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +2
Query: 269 LGLGRILRSPTKTTCLPLNFFSSSRTS 349
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 222 TLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVH-LDKNQQTTIEHKGGH 67
T+ + +D ++ D + + GKR+ Q IKV ++ NQQT +E GH
Sbjct: 3 TVDTQHDDMIHDAIL--DYYGKRLAT-CSSDQTIKVFSIENNQQTLLETLRGH 52
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -1
Query: 296 ETVRSCLSPATKPVLLTNKRGHAQ 225
E+ + ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = -3
Query: 399 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 307
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 241 KEATLKDIDLCVRCYPRGLGLPC 173
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 279 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 154
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 92 VCWFLSKCTLMSCEPSNLTLMR 157
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,517
Number of Sequences: 5004
Number of extensions: 46865
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -