Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18m21
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 163 1e-40
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 145 3e-35
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 75 4e-14
12_01_0835 + 7794487-7794580,7796188-7796291,7796619-7797112,779... 30 1.6
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 1.6
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 2.2
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 2.2
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 3.8
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 3.8
03_02_0488 - 8824980-8825267,8825364-8827775 29 3.8
06_02_0105 - 11893666-11895483,11895661-11896422 28 5.0
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 6.6
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 28 6.6
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 27 8.7
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 163 bits (396), Expect = 1e-40
Identities = 83/164 (50%), Positives = 119/164 (72%), Gaps = 2/164 (1%)
Frame = -3
Query: 561 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 388
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 387 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 208
KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+RTLT+V
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAV 122
Query: 207 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 76
+D ILED+V+PAEIVGKRIR +LDG+++IK+ LD ++ E+K
Sbjct: 123 HDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYK 166
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 145 bits (351), Expect = 3e-35
Identities = 75/146 (51%), Positives = 105/146 (71%), Gaps = 2/146 (1%)
Frame = -3
Query: 507 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 334
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 333 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 154
EKKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153
Query: 153 IRVKLDGSQLIKVHLDKNQQTTIEHK 76
+R LDG +++K+ LD ++ E+K
Sbjct: 154 VRYHLDGRKIMKIFLDPKERNNTEYK 179
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 74.9 bits (176), Expect = 4e-14
Identities = 42/98 (42%), Positives = 63/98 (64%)
Frame = -3
Query: 453 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 274
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 273 PSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 160
P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 89 PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>12_01_0835 +
7794487-7794580,7796188-7796291,7796619-7797112,
7797219-7797358,7797516-7797817,7798312-7798578
Length = 466
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +2
Query: 8 FGELEGNFASRLASCIQTGRCPPLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTK 187
FG A+ +A+C + R I V W L + M+ ++LT+ +L +
Sbjct: 289 FGHATAAVAAGVAACAEARRLRASMGIAVAWLLPQYLAMAASDASLTVGQLEFFYGQSPE 348
Query: 188 SSRIAS 205
+ R AS
Sbjct: 349 TMRSAS 354
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 183 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 76
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -3
Query: 234 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 118
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 239 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 355
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = -3
Query: 501 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 367
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -3
Query: 501 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 367
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = -3
Query: 552 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 376
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 375 KAFQKI 358
+ +++
Sbjct: 359 DSSEEL 364
>06_02_0105 - 11893666-11895483,11895661-11896422
Length = 859
Score = 28.3 bits (60), Expect = 5.0
Identities = 31/158 (19%), Positives = 64/158 (40%)
Frame = -3
Query: 570 MSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV 391
+ T++IK A A + + ++ +++ LREL +AKE E N + +
Sbjct: 541 LKTELIKEKTALATMKQMEATSSIAAASLRVEIQLALRELEAVQAKEKESRNGMLGLQKI 600
Query: 390 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 211
K + + + RE ++K + L + + K+ ++
Sbjct: 601 MEDTAKEADESK-SIAREAQEKLRKAKEDMDHAKSCLDTMEFRIQAVLKEMEATKESMRL 659
Query: 210 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQ 97
DA+ F +E+ + ++ GSQ++ V LD+ Q
Sbjct: 660 AIDALRP---FDSEL---PVDIEEQGSQIVTVDLDEYQ 691
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = -3
Query: 501 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 367
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>03_01_0423 +
3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = -3
Query: 576 VKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIII 397
V++ + ++ S E +SF S+ + + + D L + Y KEI N+ ++ +
Sbjct: 528 VRVQEQELEQSRKEIESFHLSLQDEMAKRKQAEDALCSLEKQYAQSQKEI---NRLTLDM 584
Query: 396 YVPMPKLKAFQKIQIRL---VRELEKKFSGKHV 307
+ +L F +++ L V EL+K+ + V
Sbjct: 585 EMANDRLNDFNLVRLNLENTVCELKKEVTSLEV 617
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 27.5 bits (58), Expect = 8.7
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Frame = -3
Query: 366 QKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILED 187
QK ++ + + ++ + F ++KI A Q++ S +S+ ++
Sbjct: 1001 QKTTVKRIAQQQRLKISSDLPFRSNKKIFDSQM----AAMSQEKSSSSPTSSIVESYANK 1056
Query: 186 LVFPAEIVGKRIRVKLDGSQ---LIK-VHLDKNQQTTIEHKGGHLPVCIQEAKRDAKLPS 19
L +P+E++ ++ K G Q L K V +HK LP ++ + + KL S
Sbjct: 1057 LHYPSEVLHEK--TKPSGPQHNTLFKWVKESAGPSQGPQHKYPELPGQLKSSDQTPKLGS 1114
Query: 18 SSP 10
SSP
Sbjct: 1115 SSP 1117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,750,662
Number of Sequences: 37544
Number of extensions: 318066
Number of successful extensions: 885
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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