Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18m21
(605 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7 prot... 252 5e-67
M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein. 252 5e-67
BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7 pr... 252 5e-67
BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7 pr... 252 5e-67
BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7 pr... 252 5e-67
AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein. 252 5e-67
AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7 va... 92 2e-18
BC073744-1|AAH73744.1| 648|Homo sapiens ITSN1 protein protein. 32 1.8
X13482-1|CAA31838.1| 255|Homo sapiens protein ( Human mRNA for ... 31 2.4
BC071717-1|AAH71717.1| 255|Homo sapiens small nuclear ribonucle... 31 2.4
BC022816-1|AAH22816.1| 255|Homo sapiens small nuclear ribonucle... 31 2.4
AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sortin... 31 2.4
AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sortin... 31 2.4
AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sortin... 31 2.4
AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sortin... 31 2.4
AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sortin... 31 2.4
AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sortin... 31 2.4
AK223070-1|BAD96790.1| 255|Homo sapiens small nuclear ribonucle... 31 2.4
AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein. 31 2.4
AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein. 31 2.4
AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis p... 31 2.4
AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein. 31 2.4
BC044808-1|AAH44808.1| 440|Homo sapiens C14orf45 protein protein. 31 4.2
AL078621-9|CAB81646.1| 255|Homo sapiens protein ( G islands. ).). 31 4.2
DQ679757-1|ABG74698.1| 1215|Homo sapiens intersectin 1 short for... 30 5.5
DQ679756-1|ABG74697.1| 1178|Homo sapiens intersectin 1 short for... 30 5.5
DQ679755-1|ABG74696.1| 1149|Homo sapiens intersectin 1 short for... 30 5.5
DQ679754-1|ABG74695.1| 1144|Homo sapiens intersectin 1 short for... 30 5.5
DQ386455-1|ABD72328.1| 1020|Homo sapiens intersectin 1 short for... 30 5.5
DQ340865-1|ABC69037.1| 1076|Homo sapiens intersectin 1 short for... 30 5.5
BX538175-1|CAD98050.1| 627|Homo sapiens hypothetical protein pr... 30 5.5
BC117560-1|AAI17561.1| 1144|Homo sapiens ITSN1 protein protein. 30 5.5
BC116186-1|AAI16187.1| 1721|Homo sapiens intersectin 1 (SH3 doma... 30 5.5
BC116185-1|AAI16186.1| 1716|Homo sapiens ITSN1 protein protein. 30 5.5
AK223110-1|BAD96830.1| 255|Homo sapiens small nuclear ribonucle... 30 5.5
AF114488-1|AAD29953.1| 1220|Homo sapiens intersectin short isofo... 30 5.5
AF114487-1|AAD29952.1| 1721|Homo sapiens intersectin long isofor... 30 5.5
AF064244-1|AAC78611.1| 1721|Homo sapiens intersectin long form p... 30 5.5
AF064243-1|AAC78610.1| 1220|Homo sapiens intersectin short form ... 30 5.5
AB076353-1|BAD01540.1| 365|Homo sapiens keratin associated prot... 30 7.3
AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250... 29 9.6
AJ566387-1|CAD97467.1| 251|Homo sapiens keratin associated prot... 29 9.6
AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associ... 29 9.6
AB076358-1|BAD01545.1| 251|Homo sapiens keratin associated prot... 29 9.6
>Z25749-1|CAA81022.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 252 bits (618), Expect = 5e-67
Identities = 123/165 (74%), Positives = 145/165 (87%), Gaps = 1/165 (0%)
Frame = -3
Query: 567 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 391
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 390 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 211
P+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 210 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 76
V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHK
Sbjct: 125 VHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHK 169
>M77233-1|AAB00969.1| 192|Homo sapiens ribosomal protein protein.
Length = 192
Score = 252 bits (618), Expect = 5e-67
Identities = 123/165 (74%), Positives = 145/165 (87%), Gaps = 1/165 (0%)
Frame = -3
Query: 567 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 391
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 3 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 62
Query: 390 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 211
P+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 63 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 122
Query: 210 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 76
V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHK
Sbjct: 123 VHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHK 167
>BC071919-1|AAH71919.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 252 bits (618), Expect = 5e-67
Identities = 123/165 (74%), Positives = 145/165 (87%), Gaps = 1/165 (0%)
Frame = -3
Query: 567 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 391
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 390 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 211
P+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 210 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 76
V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHK
Sbjct: 125 VHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHK 169
>BC061901-1|AAH61901.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 252 bits (618), Expect = 5e-67
Identities = 123/165 (74%), Positives = 145/165 (87%), Gaps = 1/165 (0%)
Frame = -3
Query: 567 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 391
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 390 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 211
P+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 210 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 76
V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHK
Sbjct: 125 VHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHK 169
>BC002866-1|AAH02866.1| 194|Homo sapiens ribosomal protein S7
protein.
Length = 194
Score = 252 bits (618), Expect = 5e-67
Identities = 123/165 (74%), Positives = 145/165 (87%), Gaps = 1/165 (0%)
Frame = -3
Query: 567 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 391
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 390 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 211
P+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 210 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 76
V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHK
Sbjct: 125 VHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHK 169
>AC108488-2|AAX82027.1| 194|Homo sapiens unknown protein.
Length = 194
Score = 252 bits (618), Expect = 5e-67
Identities = 123/165 (74%), Positives = 145/165 (87%), Gaps = 1/165 (0%)
Frame = -3
Query: 567 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHN-KKSIIIYV 391
S KI+K +G + D FE+ ISQAL+ELE NSDLKAQLREL IT AKEIE+ +K+III+V
Sbjct: 5 SAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFV 64
Query: 390 PMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTS 211
P+P+LK+FQKIQ+RLVRELEKKFSGKHVVF+ R+ILPKP+ K+R NKQKRPRSRTLT+
Sbjct: 65 PVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTA 124
Query: 210 VYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 76
V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHK
Sbjct: 125 VHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHK 169
>AB209386-1|BAD92623.1| 78|Homo sapiens ribosomal protein S7
variant protein.
Length = 78
Score = 91.9 bits (218), Expect = 2e-18
Identities = 43/51 (84%), Positives = 48/51 (94%)
Frame = -3
Query: 228 SRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 76
SRTLT+V+DAILEDLVFP+EIVGKRIRVKLDGS+LIKVHLDK QQ +EHK
Sbjct: 10 SRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHK 60
>BC073744-1|AAH73744.1| 648|Homo sapiens ITSN1 protein protein.
Length = 648
Score = 31.9 bits (69), Expect = 1.8
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEKK
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKK 645
>X13482-1|CAA31838.1| 255|Homo sapiens protein ( Human mRNA for U2
snRNP-specific A' protein. ).
Length = 255
Score = 31.5 bits (68), Expect = 2.4
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -3
Query: 510 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 343
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 342 RELEKKFSGK 313
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>BC071717-1|AAH71717.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' protein.
Length = 255
Score = 31.5 bits (68), Expect = 2.4
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -3
Query: 510 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 343
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 342 RELEKKFSGK 313
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>BC022816-1|AAH22816.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' protein.
Length = 255
Score = 31.5 bits (68), Expect = 2.4
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -3
Query: 510 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 343
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 342 RELEKKFSGK 313
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>AL359204-2|CAI39538.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 31.5 bits (68), Expect = 2.4
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -3
Query: 531 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 370
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 369 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 190
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 189 DLVFP 175
+ P
Sbjct: 823 QKIIP 827
>AL359204-1|CAI39537.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 31.5 bits (68), Expect = 2.4
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -3
Query: 531 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 370
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 369 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 190
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 189 DLVFP 175
+ P
Sbjct: 823 QKIIP 827
>AL353710-2|CAH74106.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 31.5 bits (68), Expect = 2.4
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -3
Query: 531 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 370
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 369 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 190
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 189 DLVFP 175
+ P
Sbjct: 823 QKIIP 827
>AL353710-1|CAH74105.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 31.5 bits (68), Expect = 2.4
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -3
Query: 531 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 370
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 369 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 190
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 189 DLVFP 175
+ P
Sbjct: 823 QKIIP 827
>AL158159-2|CAI40936.1| 3174|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3174
Score = 31.5 bits (68), Expect = 2.4
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -3
Query: 531 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 370
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 369 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 190
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 189 DLVFP 175
+ P
Sbjct: 823 QKIIP 827
>AL158159-1|CAI40935.1| 3095|Homo sapiens vacuolar protein sorting 13
homolog A (S. cerevisiae) protein.
Length = 3095
Score = 31.5 bits (68), Expect = 2.4
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -3
Query: 531 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 370
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 369 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 190
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 189 DLVFP 175
+ P
Sbjct: 823 QKIIP 827
>AK223070-1|BAD96790.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' variant protein.
Length = 255
Score = 31.5 bits (68), Expect = 2.4
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -3
Query: 510 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 343
+ +LVEL + D A L+ L + NKK +YV P ++ FQK++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155
Query: 342 RELEKKFSGK 313
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>AJ626859-1|CAF25186.1| 3069|Homo sapiens chorein 1D protein.
Length = 3069
Score = 31.5 bits (68), Expect = 2.4
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -3
Query: 531 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 370
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 369 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 190
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 189 DLVFP 175
+ P
Sbjct: 823 QKIIP 827
>AJ608769-1|CAE75581.1| 3135|Homo sapiens chorein 2A protein.
Length = 3135
Score = 31.5 bits (68), Expect = 2.4
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -3
Query: 531 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 370
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 369 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 190
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 189 DLVFP 175
+ P
Sbjct: 823 QKIIP 827
>AF337532-1|AAK61861.1| 3174|Homo sapiens chorea-acanthocytosis
protein.
Length = 3174
Score = 31.5 bits (68), Expect = 2.4
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -3
Query: 531 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 370
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 369 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 190
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 189 DLVFP 175
+ P
Sbjct: 823 QKIIP 827
>AB054005-1|BAB59128.1| 3095|Homo sapiens chorein protein.
Length = 3095
Score = 31.5 bits (68), Expect = 2.4
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = -3
Query: 531 DSFETSISQALVELETNSDLKAQLRELYI-TKAKEIELH-----NKKSIIIYVPMPKLKA 370
DSF+ ++ + D + R+L + T+ + +H +K + + V MPK K
Sbjct: 707 DSFDIQLTSVQLLYSRVGDNWREARKLSVSTQHILVPMHFNLELSKAMVFMDVRMPKFKI 766
Query: 369 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 190
+ K+ + +R +KK G + + +PKP T V+ K + +T TS+ + +
Sbjct: 767 YGKLPLISLRISDKKLQGIMELI----ESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQIS 822
Query: 189 DLVFP 175
+ P
Sbjct: 823 QKIIP 827
>BC044808-1|AAH44808.1| 440|Homo sapiens C14orf45 protein protein.
Length = 440
Score = 30.7 bits (66), Expect = 4.2
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Frame = -3
Query: 555 IKASGAEADSFETSISQALVEL-ETNSDLKAQLRELYITKAKEIE--LHNK-KSI-IIYV 391
+K E D+ + Q L E E + K +L + Y + E+E H K K I +I+
Sbjct: 85 LKKQDQEKDNMIEKLKQQLNETKEKAQEEKDKLEQKYTRQINELEGQFHQKAKEIGMIHT 144
Query: 390 PMPKLKAFQKIQIRLVRELE 331
+ ++ FQK +I++ REL+
Sbjct: 145 ELKAVRQFQKRKIQVERELD 164
>AL078621-9|CAB81646.1| 255|Homo sapiens protein ( G islands. ).).
Length = 255
Score = 30.7 bits (66), Expect = 4.2
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Frame = -3
Query: 501 LVELETNSDLKAQLREL-YITKAKEIELHNK--KSIIIY-VPMPKLKAFQKIQIRLVREL 334
LVEL + D A L+ L Y++ + + + K + +IY VP ++ FQK++++ +E
Sbjct: 100 LVELG-DLDPLASLKSLTYLSILRNLVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEA 158
Query: 333 EKKFSGK 313
EK F GK
Sbjct: 159 EKMFKGK 165
>DQ679757-1|ABG74698.1| 1215|Homo sapiens intersectin 1 short form
variant 5 protein.
Length = 1215
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ679756-1|ABG74697.1| 1178|Homo sapiens intersectin 1 short form
variant 2 protein.
Length = 1178
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 552 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 608
>DQ679755-1|ABG74696.1| 1149|Homo sapiens intersectin 1 short form
variant 7 protein.
Length = 1149
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ679754-1|ABG74695.1| 1144|Homo sapiens intersectin 1 short form
variant 6 protein.
Length = 1144
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ386455-1|ABD72328.1| 1020|Homo sapiens intersectin 1 short form
transcript variant 8 protein.
Length = 1020
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>DQ340865-1|ABC69037.1| 1076|Homo sapiens intersectin 1 short form
protein.
Length = 1076
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 587 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 643
>BX538175-1|CAD98050.1| 627|Homo sapiens hypothetical protein
protein.
Length = 627
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 444 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 500
>BC117560-1|AAI17561.1| 1144|Homo sapiens ITSN1 protein protein.
Length = 1144
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>BC116186-1|AAI16187.1| 1721|Homo sapiens intersectin 1 (SH3 domain
protein) protein.
Length = 1721
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>BC116185-1|AAI16186.1| 1716|Homo sapiens ITSN1 protein protein.
Length = 1716
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AK223110-1|BAD96830.1| 255|Homo sapiens small nuclear
ribonucleoprotein polypeptide A' variant protein.
Length = 255
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Frame = -3
Query: 510 SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV----PMPKLKAFQKIQIRLV 343
+ +LVEL + D A L+ L + NKK +YV P ++ FQ+++++
Sbjct: 97 NNSLVELG-DLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVRVLDFQRVKLKER 155
Query: 342 RELEKKFSGK 313
+E EK F GK
Sbjct: 156 QEAEKMFKGK 165
>AF114488-1|AAD29953.1| 1220|Homo sapiens intersectin short isoform
protein.
Length = 1220
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AF114487-1|AAD29952.1| 1721|Homo sapiens intersectin long isoform
protein.
Length = 1721
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AF064244-1|AAC78611.1| 1721|Homo sapiens intersectin long form
protein.
Length = 1721
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AF064243-1|AAC78610.1| 1220|Homo sapiens intersectin short form
protein.
Length = 1220
Score = 30.3 bits (65), Expect = 5.5
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 498 VELETNSDLKAQLRELYITKAKEI-ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 325
VE ET S K Q +++ + KE+ E+HNK+ + M + QK Q R + ELEK+
Sbjct: 589 VEKETRS--KLQEIDIFNNQLKELREIHNKQQLQKQKSMEAERLKQKEQERKIIELEKQ 645
>AB076353-1|BAD01540.1| 365|Homo sapiens keratin associated protein
protein.
Length = 365
Score = 29.9 bits (64), Expect = 7.3
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +2
Query: 47 SCIQTGRCPPLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSS 193
SC Q C P C C S + C P + +P S G + SS
Sbjct: 281 SCCQQSSCQPACCTASCCRSSSSVSLLCHPVCKSTCCVPVPSCGASASS 329
>AL121586-7|CAB89415.1| 2442|Homo sapiens centrosomal protein 250kDa
protein.
Length = 2442
Score = 29.5 bits (63), Expect = 9.6
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = -3
Query: 522 ETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQK--IQIR 349
+ + +A +EL + DLK + +E+ + + + EL +S++ ++PM + QK +Q
Sbjct: 1450 QREMQKAALEL-LSLDLKKRNQEVDLQQEQIQELEKCRSVLEHLPMAVQEREQKLTVQRE 1508
Query: 348 LVRELEK 328
+RELEK
Sbjct: 1509 QIRELEK 1515
>AJ566387-1|CAD97467.1| 251|Homo sapiens keratin associated protein
KAP10.10 protein.
Length = 251
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +2
Query: 47 SCIQTGRCPPLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSS 193
SC Q C P C C S + C P + +P S G + SS
Sbjct: 167 SCCQQSSCQPACCTASCCRPSSSVSLLCHPVCKSTCCVPVPSCGASASS 215
>AF049105-1|AAC07988.1| 2442|Homo sapiens centrosomal Nek2-associated
protein 1 protein.
Length = 2442
Score = 29.5 bits (63), Expect = 9.6
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = -3
Query: 522 ETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQK--IQIR 349
+ + +A +EL + DLK + +E+ + + + EL +S++ ++PM + QK +Q
Sbjct: 1450 QREMQKAALEL-LSLDLKKRNQEVDLQQEQIQELEKCRSVLEHLPMAVQEREQKLTVQRE 1508
Query: 348 LVRELEK 328
+RELEK
Sbjct: 1509 QIRELEK 1515
>AB076358-1|BAD01545.1| 251|Homo sapiens keratin associated protein
protein.
Length = 251
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +2
Query: 47 SCIQTGRCPPLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSS 193
SC Q C P C C S + C P + +P S G + SS
Sbjct: 167 SCCQQSSCQPACCTASCCRPSSSVSLLCHPVCKSTCCVPVPSCGASASS 215
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,588,400
Number of Sequences: 237096
Number of extensions: 1749664
Number of successful extensions: 4272
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 3821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4258
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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