Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18m17
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   1.8  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   1.8  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.4  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   3.1  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    24   7.2  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    24   9.6  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    24   9.6  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 163  LQHIAPSITL*FFKYVL*MYFTSRFLSA 246
            L H++P I+   +KY L   F S F+ A
Sbjct: 1473 LHHVSPDISTHLYKYYLRRNFVSSFIDA 1500


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -1

Query: 143 VVLDRNQLQNTDMEVLESLEYHLVTNVELLCKKVCVIVDNYNQV 12
           ++L+ + LQ      L+++E HL+  +E       +I+DN  Q+
Sbjct: 208 LLLNNSMLQEKISWYLDTVELHLLQEIENASDSFPMIIDNLKQL 251


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 223 FTSRFLSALGTSNTLAVRCIMLKINSADAELYRPRFI 333
           FT  FLS +G SNT+ V+ + L    AD  ++R + +
Sbjct: 151 FTKSFLSKIGESNTITVKGMPL----ADVLVFRKKVL 183


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 132 PKSAAKHGHGSVGKFRIP 79
           PKS A +GHGSV    +P
Sbjct: 393 PKSQAAYGHGSVTYHEVP 410


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 290 FNIMHLTA-NVLLVPNALKKRDVKYIYNTYLKNYSVIE 180
           +N++  TA NV+     + + +++Y  N + K Y +IE
Sbjct: 724 YNMLRTTAVNVIRHLGVVGECNIQYALNPFTKEYCIIE 761


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 320 LYNSASAEFIFNIMHLTA-NVLL 255
           LY SA   F+F++MHL A N LL
Sbjct: 697 LYCSAIVLFLFSVMHLGAENPLL 719


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -1

Query: 359 RTKCLVAQKINLGLYNSASAEFIFNIMHLTANVLLVPNALKKRDV 225
           +T C V   I  G+Y S     +F      AN +      K+R V
Sbjct: 329 QTNCYVGPNITYGIYESNVPNELFICTRRAANNMAYQKLSKERGV 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,759
Number of Sequences: 5004
Number of extensions: 35458
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)