Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18m17
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1187 + 35232252-35232976,35233078-35233134,35233323-35233692     29   0.97 
03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072...    29   1.3  
01_07_0061 + 40818077-40818241,40818494-40818716,40819015-408192...    29   1.7  
08_02_0126 + 12835431-12838183,12838471-12838566,12838920-128389...    28   3.0  
11_06_0277 + 21843658-21845220,21846533-21846718,21847037-218471...    27   3.9  
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275...    27   6.9  

>01_06_1187 + 35232252-35232976,35233078-35233134,35233323-35233692
          Length = 383

 Score = 29.5 bits (63), Expect = 0.97
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +2

Query: 14  LGCNYQLSHILFCITIQRWSLGGI-LNFPTLPCPCFAA--DFGPTPQRPNNRHCNTSHLQ 184
           L C    +H +  + +   S+GGI +NF  L    F A    GPT     N    TS ++
Sbjct: 31  LWCTIIDTHRMLRVDLLPHSVGGIFINFHDLGLSEFFARPSTGPTISGNINYLPLTSIVR 90

Query: 185 LHCNFSNMYYKCISRP 232
            HCN   + Y  ISRP
Sbjct: 91  GHCNGLLLLYSHISRP 106


>03_05_0466 -
           24602715-24603964,24605762-24605944,24606381-24607286,
           24609446-24609516,24609737-24609846,24610073-24610108,
           24610211-24610278,24610655-24610760,24610850-24610997,
           24611091-24611218,24611319-24611454,24611924-24612072
          Length = 1096

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 98  TLPCPCFAADFGPTPQRPNNRHCNTSHLQLHCNFSNMY 211
           T PCP  +      P+R  N  CNTS L  +C    ++
Sbjct: 29  TPPCPVCSHSLSLPPERNPNYRCNTSLLIDYCQHDGIH 66


>01_07_0061 +
           40818077-40818241,40818494-40818716,40819015-40819263,
           40819455-40819505,40819611-40819871,40819994-40820046,
           40820234-40820348,40820475-40820696,40821280-40822253
          Length = 770

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -1

Query: 284 IMHLTA--NVLLVPNA--LKKRDVKYIYNTYLKNYSVIEGAMC 168
           ++HL    NV+  PNA  LKK  V Y+YN   KN+   E   C
Sbjct: 713 VVHLLGETNVVAEPNADFLKKIIVDYVYNFIRKNFRQPEKITC 755


>08_02_0126 + 12835431-12838183,12838471-12838566,12838920-12838971,
            12839198-12839298,12839349-12839370
          Length = 1007

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
 Frame = -1

Query: 260  LLVPNALKKRDVKYIYNTYLKNYSVIEGAMC---CNGDCLAVVVLDRNQLQNTDMEVLES 90
            +L   A KKR  K++     K    ++ A C   C G C    +     L    +E+L +
Sbjct: 909  ILAREASKKRSWKHVAGCITK----VKRATCSTSCTGQCFCSSLSRLYYLYPIKIEILAN 964

Query: 89   LEYHLVTNVELLCKKVCVIVDNY 21
            L   + TN   L  K C+ ++ +
Sbjct: 965  LGQIITTNGRELYAKACLFLNKH 987


>11_06_0277 +
           21843658-21845220,21846533-21846718,21847037-21847165,
           21847256-21847415,21847846-21847955,21848038-21848247,
           21848473-21848730,21848810-21848885,21849217-21849350,
           21849928-21850007,21850265-21850316
          Length = 985

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -1

Query: 194 YSVIEGAMCCNGDCLAVVVLDRNQLQNTDMEVLESLEYHLVTNVELLCKKV 42
           +S++ G+      C+A  +LD  ++ + D  V  SL+   V++VE +  +V
Sbjct: 313 FSIVNGSEVSYLGCVAFSILDGPEIPSIDPMVFSSLDEPEVSSVEPVSNEV 363


>03_05_0776 +
           27625122-27625415,27627226-27627273,27627455-27627514,
           27627633-27627802,27627901-27627973,27628096-27628161,
           27628262-27628345,27628681-27628758,27629009-27629092,
           27629835-27630137,27630227-27630397,27630971-27631161,
           27631284-27631686,27632246-27632497,27632577-27633077,
           27633181-27633278,27633400-27633499,27633722-27633867,
           27633973-27634138
          Length = 1095

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 175 APSITL*FFKYVL*MYFTSRFLSA 246
           AP+IT     YVL M+FT+ F+SA
Sbjct: 9   APAITKFLKPYVLKMHFTNNFVSA 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,043,459
Number of Sequences: 37544
Number of extensions: 222035
Number of successful extensions: 552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)