Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18m17
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical ...    31   0.21 
U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical p...    29   0.86 
Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    29   1.5  
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    29   1.5  
Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical p...    27   3.5  
Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical pr...    27   4.6  
U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical...    27   4.6  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    27   6.1  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    27   6.1  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    27   6.1  
Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AF016418-8|AAK18897.1|  330|Caenorhabditis elegans Serpentine re...    26   8.1  

>AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical
           protein C13A2.9 protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 323 GLYNSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTY 204
           GL+   S   IFN   L A++LL+ N +K    K I+N +
Sbjct: 12  GLFRKCSFRRIFNFAFLGASILLLYNFMKPNTSKAIFNAF 51


>U64843-13|AAF98228.1|  355|Caenorhabditis elegans Hypothetical
           protein K06C4.8 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 0.86
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -1

Query: 350 CLVAQKINLGLYNSASAEF-IFNIMHLTANVLLVPNALKKRDVKYIYNTYLKNY-SVIEG 177
           C   + INL  +N    +F IF I+H  +NVLLV          +IY  + + Y +V+  
Sbjct: 260 CTSVKFINLFSHNYVQFQFVIFKIIHHISNVLLV---FYSASTFFIYLIFSEKYRNVLST 316

Query: 176 AMCC-NGDCLAVVVLDRNQLQNT 111
            + C N D L V    R   + T
Sbjct: 317 CVTCRNTDELTVSSRGRQNTKTT 339


>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = -1

Query: 263 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVLES 90
           + L  N L+ R V  I+NT L +   ++      GD L   + +L+  +L N ++  L +
Sbjct: 92  ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151

Query: 89  LE--YHLVTNVELLCKKVCVIV 30
                 +  N  L  +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = -1

Query: 263 VLLVPNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCL--AVVVLDRNQLQNTDMEVLES 90
           + L  N L+ R V  I+NT L +   ++      GD L   + +L+  +L N ++  L +
Sbjct: 92  ITLFKNVLQIRGVLQIWNTQLTSAPFMKNIQNITGDPLDKGLSILNNTKLNNLNISSLSN 151

Query: 89  LE--YHLVTNVELLCKKVCVIV 30
                 +  N  L  +K+C I+
Sbjct: 152 SNNIVEIKNNPNLNLQKMCSII 173


>Z81076-12|CAB03061.2|  161|Caenorhabditis elegans Hypothetical
           protein F35C5.11 protein.
          Length = 161

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 384 IECEECGVTHKMPGCAKNKPGSI*LGVGRVY 292
           I+C +CG   K+P  AKN    + + V  +Y
Sbjct: 21  IKCHQCGGAEKIPKFAKNALAKLNISVDSLY 51


>Z93785-2|CAB07859.2| 1335|Caenorhabditis elegans Hypothetical protein
            W09D10.2 protein.
          Length = 1335

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 177  TFNYTVIFQICIINVFHVPLF 239
            TF + ++ Q+ I+N FH+ LF
Sbjct: 1176 TFGHLLVTQLIIVNTFHLALF 1196


>U40938-6|AAA81698.1|  655|Caenorhabditis elegans Hypothetical
           protein D1009.1a protein.
          Length = 655

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 207 CIINVFHVPLFERVRNKQYISRQMH 281
           CI N+  +P+F+  R K  IS ++H
Sbjct: 183 CITNINLLPMFKAAREKNLISDEIH 207


>AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical
           protein Y54E10A.16a protein.
          Length = 427

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 180 FNYTVIFQICIINVFHVPLF-ERVRNKQYISRQMHNVKN 293
           FN+  +  IC +     P F ER RNKQYI  +M+ V N
Sbjct: 359 FNHYKVKSICDV----WPDFNERERNKQYIKTEMNQVPN 393


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 83  ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 181
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 66  VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 98


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 83  ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 181
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 83  VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 115


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 83  ILNFPTLPCPCFAADFGPTPQRPNNRHCNTSHL 181
           + +  TLP P  A  +  TPQ+P   H + +HL
Sbjct: 195 VKSISTLPPPPPALSYHQTPQQPQLLHHHNNHL 227


>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical
           protein F14B4.3 protein.
          Length = 1127

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 171 VLQWRLFGRCGVGPKSAAKHGHGSVGKFRIP 79
           ++QWR+     +G K A++HG   +  F  P
Sbjct: 842 LIQWRIERNPIIGDKFASRHGQKGINSFLWP 872


>AF016418-8|AAK18897.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein169 protein.
          Length = 330

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 137 TPQRPNNRHCNTSHLQLHCNFSNMYYKCISRP 232
           TP +  N       L L C FS+ Y+ C++ P
Sbjct: 41  TPSKMQNVRNTMFLLHLVCAFSDFYFSCLAIP 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,912,098
Number of Sequences: 27780
Number of extensions: 210745
Number of successful extensions: 599
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)