Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc18m17
(386 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein. 25 0.40
AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly pro... 25 0.40
AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly pro... 25 0.40
AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precur... 23 0.92
X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein. 23 1.6
EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2 prot... 23 1.6
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 1.6
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 1.6
AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2 prot... 23 1.6
AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phospha... 22 2.8
DQ091183-1|AAZ42363.1| 128|Apis mellifera lipophorin receptor p... 21 3.7
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 21 3.7
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 21 3.7
AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49 ... 21 3.7
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 3.7
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 21 6.5
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 21 6.5
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 21 6.5
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 21 6.5
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 20 8.6
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 20 8.6
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 20 8.6
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 20 8.6
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 20 8.6
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 20 8.6
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 20 8.6
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 20 8.6
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 20 8.6
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 20 8.6
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 20 8.6
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 20 8.6
>D79207-1|BAA23639.1| 432|Apis mellifera milk protein protein.
Length = 432
Score = 24.6 bits (51), Expect = 0.40
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 225 HVPLFERVRNKQYI 266
HVP+F+R N++YI
Sbjct: 365 HVPIFDRYINREYI 378
>AF388203-1|AAM73637.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 24.6 bits (51), Expect = 0.40
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 225 HVPLFERVRNKQYI 266
HVP+F+R N++YI
Sbjct: 365 HVPIFDRYINREYI 378
>AF000633-1|AAC61895.1| 432|Apis mellifera major royal jelly
protein MRJP1 protein.
Length = 432
Score = 24.6 bits (51), Expect = 0.40
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 225 HVPLFERVRNKQYI 266
HVP+F+R N++YI
Sbjct: 365 HVPIFDRYINREYI 378
>AY127579-1|AAN02286.1| 405|Apis mellifera venom protease precursor
protein.
Length = 405
Score = 23.4 bits (48), Expect = 0.92
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 155 NRHCNTSHLQLHCNFSNMY 211
N++CN L + NF+N Y
Sbjct: 92 NKNCNAGSLTVKKNFANKY 110
>X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein.
Length = 162
Score = 22.6 bits (46), Expect = 1.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 173 SHLQLHCNFSNMYYKCISRPA 235
SH +L C+ + +Y C+ A
Sbjct: 83 SHTRLSCDCDDKFYDCLKNSA 103
>EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 22.6 bits (46), Expect = 1.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 173 SHLQLHCNFSNMYYKCISRPA 235
SH +L C+ + +Y C+ A
Sbjct: 88 SHTRLSCDCDDKFYDCLKNSA 108
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.6 bits (46), Expect = 1.6
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 153 FGRCGVGPKSAAKHGHGSVGKFRIPPSD 70
F + G GP S + H + G PP D
Sbjct: 1060 FNKVGSGPMSEERRQHTAEGVPEQPPHD 1087
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.6 bits (46), Expect = 1.6
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -1
Query: 230 DVKYIYNTYLKNYSVIEGAMCCNGDCLAVVVLDRNQLQNTDMEVLESLEYHLVTNVEL 57
D K +Y+ L NY+ + + N D + VV L Q D+ + + + L TNV L
Sbjct: 20 DAKRLYDDLLSNYNRLIRPVSNNNDTV-VVKLGLRLSQLIDLNLKDQI---LTTNVWL 73
>AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 22.6 bits (46), Expect = 1.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +2
Query: 173 SHLQLHCNFSNMYYKCISRPA 235
SH +L C+ + +Y C+ A
Sbjct: 88 SHTRLSCDCDDKFYDCLKNSA 108
>AF023666-1|AAC14552.1| 363|Apis mellifera sn-glycerol-3-phosphate
dehydrogenase protein.
Length = 363
Score = 21.8 bits (44), Expect = 2.8
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 186 YTVIFQICIINVFHVPLFERVRN-KQYI 266
+T + +ICI + L E +RN +YI
Sbjct: 323 FTTVHRICIGETMPMELIENLRNHPEYI 350
>DQ091183-1|AAZ42363.1| 128|Apis mellifera lipophorin receptor
protein.
Length = 128
Score = 21.4 bits (43), Expect = 3.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +2
Query: 326 GLFFAQPGILCVTPHSSHSI 385
GL G++CV S HSI
Sbjct: 67 GLKLLSDGLMCVEKDSIHSI 86
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 21.4 bits (43), Expect = 3.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 251 PNALKKRDVKYIYNTYLKNYSVIEGAMCCNGDCLAV 144
P A + K +Y+ L NY+ + + N D L V
Sbjct: 13 PGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTV 48
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 21.4 bits (43), Expect = 3.7
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 173 SHLQLHCNFSNMYY 214
S L CN+SN YY
Sbjct: 305 SSLSNSCNYSNNYY 318
>AF441189-1|AAL73401.1| 134|Apis mellifera ribosomal protein 49
protein.
Length = 134
Score = 21.4 bits (43), Expect = 3.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 313 LYRPRFIFCATRHFVRH 363
+YRP + T+ F+RH
Sbjct: 6 VYRPTIVKKRTKKFIRH 22
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.4 bits (43), Expect = 3.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 151 KQSPLQHIAPSITL 192
+QSP QH+ P TL
Sbjct: 1007 QQSPQQHVLPGKTL 1020
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 6.5
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 44 LFCITIQR--WSLGGILNFPTLPCPCFAADFGPTPQRP 151
L+C ++ +++ I P +P P + +F P P P
Sbjct: 99 LYCNNYKKLYYNINYIEQIP-IPVPIYCGNFPPRPMGP 135
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 6.5
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 44 LFCITIQR--WSLGGILNFPTLPCPCFAADFGPTPQRP 151
L+C ++ +++ I P +P P + +F P P P
Sbjct: 99 LYCNNYKKLYYNINYIEQIP-IPVPIYCGNFPPRPMGP 135
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 6.5
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 44 LFCITIQR--WSLGGILNFPTLPCPCFAADFGPTPQRP 151
L+C ++ +++ I P +P P + +F P P P
Sbjct: 99 LYCNNYRKLYYNINYIEQIP-IPVPIYCGNFPPRPMGP 135
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 20.6 bits (41), Expect = 6.5
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 130 RSNTTTAKQSPLQHIAPSITL*FFKYVL 213
RSN T+ QS IA + F YVL
Sbjct: 258 RSNANTSSQSAEIRIAKAAITICFLYVL 285
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +2
Query: 101 LPCPCFAADFGPTPQRP 151
+P P + +F P P P
Sbjct: 121 IPVPVYCGNFPPRPMGP 137
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +2
Query: 101 LPCPCFAADFGPTPQRP 151
+P P + +F P P P
Sbjct: 121 IPVPIYCGNFPPRPMGP 137
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +2
Query: 101 LPCPCFAADFGPTPQRP 151
+P P + +F P P P
Sbjct: 121 IPVPVYCGNFPPRPMGP 137
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +2
Query: 101 LPCPCFAADFGPTPQRP 151
+P P + +F P P P
Sbjct: 121 IPVPVYCGNFPPRPMGP 137
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +2
Query: 101 LPCPCFAADFGPTPQRP 151
+P P + +F P P P
Sbjct: 121 IPVPVYCGNFPPRPMGP 137
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +2
Query: 101 LPCPCFAADFGPTPQRP 151
+P P + +F P P P
Sbjct: 121 IPVPVYCGNFPPRPMGP 137
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +2
Query: 101 LPCPCFAADFGPTPQRP 151
+P P + +F P P P
Sbjct: 121 IPVPVYCGNFPPRPMGP 137
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +2
Query: 101 LPCPCFAADFGPTPQRP 151
+P P + +F P P P
Sbjct: 121 IPVPVYCGNFPPRPMGP 137
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +2
Query: 101 LPCPCFAADFGPTPQRP 151
+P P + +F P P P
Sbjct: 121 IPVPVYCGNFPPRPMGP 137
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +2
Query: 101 LPCPCFAADFGPTPQRP 151
+P P + +F P P P
Sbjct: 121 IPVPVYCGNFPPRPMGP 137
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +2
Query: 101 LPCPCFAADFGPTPQRP 151
+P P + +F P P P
Sbjct: 354 IPVPVYCGNFPPRPMGP 370
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 20.2 bits (40), Expect = 8.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Frame = +2
Query: 101 LPCPCFAADFGPTPQRP 151
+P P + +F P P P
Sbjct: 354 IPVPVYCGNFPPRPMGP 370
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,789
Number of Sequences: 438
Number of extensions: 2841
Number of successful extensions: 31
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 9391092
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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