Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18m12
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    28   1.1  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   2.5  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    27   3.3  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   5.7  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   7.5  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   7.5  
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy...    25   7.5  

>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 602 SSLIVPXLWGPAPSLLST 655
           SSL+VP +WG  P++L T
Sbjct: 129 SSLVVPPVWGKMPAILQT 146


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1028

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
 Frame = +3

Query: 288  SRPDRIPRQFPHHHHGHLPS--CVPTEPGFSTGSSLHPH---LPSSN--CTAERCVARCV 446
            S+  RIP   P+  +G      CV T P     S+L PH   L +SN    AE       
Sbjct: 849  SKSGRIPTGSPYIMNGQWRKDLCVSTPPMVDINSALFPHWFKLSASNLFAGAEHAGLNRQ 908

Query: 447  KPCIHRVSTHAVLPQRALHVQFQALVHRQRRLQEP 551
            KP    +  +  LP+ +  V  +  V R  R + P
Sbjct: 909  KPDKIDLDLYEPLPENSYLVAAELRVLRALRHKNP 943


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 666 GVKSVDKREGAGPHXWGTIKDDLDELNKXXXXXXXXXEKAPEAGAG 529
           G +++ +RE A     G + D+L E +K           AP++ AG
Sbjct: 56  GPRAMKRREKAEKEKLGVVNDELAESSKPSSGAATPTRSAPKSSAG 101


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 342  PSCVPTEPGFSTGSSLHPHLPSSNCTA 422
            PS  P+ PG+ST  +  P  PS + T+
Sbjct: 1556 PSYSPSSPGYSTSPAYMPSSPSYSPTS 1582


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +1

Query: 451 LVFIECQLT---RFFLSGHCTFSFRHLSIASAGFRSLLFSSFTLRTGFV 588
           L F+ C +    RF L      +F+ L I+   F  LLF  F L  GFV
Sbjct: 167 LTFLTCVVIAYLRFALRTMSFSNFKELVISLTYFWGLLFVIFLLGNGFV 215


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 544 RSLLFSSFTLRTGFVQLVEIVLDCAPXVGTCALPLV 651
           RSL++SSF +   FV ++    +C   +G  ++ L+
Sbjct: 539 RSLIYSSFWILNPFVAIISTRGNCEAILGILSIALL 574


>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 321

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 375 TGSSLHPHLPSSNCT-AERCVARC-VKPCIHRVSTHAVLPQ 491
           TG   H  L + N T  ER +    VKP +H++  H  LPQ
Sbjct: 158 TGKVRHIGLSNFNDTNLERILKVAKVKPAVHQMELHPFLPQ 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,311
Number of Sequences: 5004
Number of extensions: 30797
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)