Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18m12
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    41   0.001
U64844-8|AAB18308.1|  330|Caenorhabditis elegans Serpentine rece...    34   0.080
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical...    31   0.99 
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    30   1.7  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    30   1.7  
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   6.9  
AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical ...    28   6.9  
AL110485-27|CAB60369.3|  515|Caenorhabditis elegans Hypothetical...    28   6.9  
AF036689-1|AAB88320.1|  186|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z81118-4|CAB03327.1|  309|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical ...    27   9.2  
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    27   9.2  

>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 30/94 (31%), Positives = 43/94 (45%)
 Frame = -1

Query: 672 KTGVKSVDKREGAGPHXWGTIKDDLDELNKXXXXXXXXXEKAPEAGAGDGQXXXXXXXXX 493
           +TGV+S DK++G G   WG  KD+L    +          + PE    +           
Sbjct: 188 RTGVRSFDKKDGHGKGNWGDQKDELAGETENIAPEGAESTE-PEV-PREKTAEELAYEAE 245

Query: 492 XXXXXXELTLDEYKALRNAQRTAPQYNLRKAGEG 391
                 + TL E+KA   A+  AP++N RKAGEG
Sbjct: 246 LAVLAKQKTLKEFKAA--AKADAPKFNTRKAGEG 277


>U64844-8|AAB18308.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein213 protein.
          Length = 330

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 25/76 (32%), Positives = 36/76 (47%)
 Frame = +1

Query: 262 LLATHALWIVGQIVFLVSFLIITTVTFLLAFQQNQVFPLAQVFTLTCLPQIVLRSGALRV 441
           L+ T   W V +  + ++  I+ TV F  A+Q      LA+ F ++  P I L   A   
Sbjct: 126 LIPTSKCWRVFRTPWFITHFIVATVFFFPAYQMIPDQQLAKNFVISIAPCIPLYVNA--- 182

Query: 442 A*SLVFIECQLTRFFL 489
              LVF+    TRFFL
Sbjct: 183 --DLVFVMLLETRFFL 196


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 348 CVPTEPGFSTGSSLHPHLPSSNCTAERCVARCVKPCIHR-VSTHAVLPQR 494
           CV  +P FS   ++    PS++ ++ +C+ +C   C  + + T+ +  Q+
Sbjct: 494 CVAAQPNFSVQINMIDETPSTSTSSPQCIPQCQPSCDQQCIQTYKIQVQQ 543


>AC025716-10|AAK39607.1|  474|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.7 protein.
          Length = 474

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +3

Query: 249 CPTNASGDPRAVDSRPDRIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHP 395
           CP  +S         P +I   F H  H   PSC+PT  G      L P
Sbjct: 91  CPKPSSESAFPFPISPTQIDLPFGHTAHDRKPSCLPTPRGSPNSPRLTP 139


>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 387  LHPHLPSSNCTAERCVARCVKPCIHRVSTHA 479
            L+P  P  NC + R V  C KP ++  S HA
Sbjct: 1655 LNPSRPGRNCLSYRGVNECEKPELNECSPHA 1685


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 387  LHPHLPSSNCTAERCVARCVKPCIHRVSTHA 479
            L+P  P  NC + R V  C KP ++  S HA
Sbjct: 1655 LNPSRPGRNCLSYRGVNECEKPELNECSPHA 1685


>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
           protein K02E2.2 protein.
          Length = 1021

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 48  THCESS*ERGNPCCRRPSAASRGD 119
           THCE     GN CC  P A++  D
Sbjct: 253 THCEKERRDGNKCCSGPLASTMRD 276


>Z81540-5|CAB04405.2|  946|Caenorhabditis elegans Hypothetical
           protein F46B3.5 protein.
          Length = 946

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 48  THCESS*ERGNPCCRRPSAASRGD 119
           THCES    GN CC    AA+  D
Sbjct: 269 THCESGKRDGNKCCDARLAATMRD 292


>Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical
           protein F33H1.3 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 267 GDPRAVDSRPDRIPRQFPHHHHGHLP 344
           G P + +S P R+P    HHHH H P
Sbjct: 233 GPPSSYNSMPTRMP----HHHHHHHP 254


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = +3

Query: 291 RPDRIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHPHLPSSNCTAER-CVARCVKPCIHRV 467
           RP   P   P ++   +P  +PT  G   G+     +PS    A+  C   C  PC ++ 
Sbjct: 99  RPSFYPSYVPQYYQPMMPQPMPTAGGCGGGAV----VPSVRIPAQNDCCCGCSSPCKYKS 154

Query: 468 STHAVLPQRAL 500
              A    + +
Sbjct: 155 VRRAAFAAKTI 165


>AL132951-7|CAD89753.2|  608|Caenorhabditis elegans Hypothetical
           protein Y67H2A.10 protein.
          Length = 608

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 312 QFPHHHHGHLPSCVPTEPGFSTGS 383
           Q  HHHH  +P+  P EP  S+G+
Sbjct: 214 QQQHHHHQQIPTSAP-EPSVSSGT 236


>AL110485-27|CAB60369.3|  515|Caenorhabditis elegans Hypothetical
           protein Y46G5A.26a protein.
          Length = 515

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 277 ALWIVGQIVFLVSFLIITTVTFLLAFQQNQVFP 375
           +LW+  +  F     II T+TFLL F  N+V P
Sbjct: 307 SLWMENETSFQDMISIILTITFLL-FSYNEVMP 338


>AF036689-1|AAB88320.1|  186|Caenorhabditis elegans Hypothetical
           protein C50A2.3 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 288 SRPDRIPRQFPHHHHGHLPSCVPTEPGFSTGSSLHPHLPSSNC 416
           +RP  + RQF + HH   P+  P    +         LPSS C
Sbjct: 119 ARPMSMNRQFQNQHHLSTPTVQPLNIQYLYPPRYEATLPSSEC 161


>Z81118-4|CAB03327.1|  309|Caenorhabditis elegans Hypothetical
           protein T10G3.4 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/56 (33%), Positives = 31/56 (55%)
 Frame = +1

Query: 448 SLVFIECQLTRFFLSGHCTFSFRHLSIASAGFRSLLFSSFTLRTGFVQLVEIVLDC 615
           S+    C +  FF++ H TF+ RH S+ +  ++ L  +   LRT FV  V +V +C
Sbjct: 160 SICICICLVILFFVNRHLTFNSRHKSVLTVRYQ-LAENVKALRT-FVPFV-VVDNC 212


>AL021480-3|CAA16328.1|  410|Caenorhabditis elegans Hypothetical
           protein Y39E4A.2b protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = +3

Query: 252 PTNASGDPRAVDSRPDRIPRQ-FPHHHHGHLPSCVPTEPGFSTGSSLHPHLPSSNCTAER 428
           P N   D ++V S    +      HHHHGH         G S G   H H  +++ ++  
Sbjct: 26  PANIEEDTQSVSSSDSGVSADSIDHHHHGH-------GHGHSHGGHGHSHTHNNDDSSSD 78

Query: 429 C 431
           C
Sbjct: 79  C 79


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 283 WIVGQIVFLVSFLIITTVTFLLAFQQNQVFPLAQV 387
           W++  I+F +S L+     F     +N+ FPL QV
Sbjct: 146 WLMAVILFFLSALLSVFYQFRFVVIENRSFPLPQV 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,463,728
Number of Sequences: 27780
Number of extensions: 190216
Number of successful extensions: 753
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)