Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18m06
         (776 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058377-1|AAL13606.1|  245|Drosophila melanogaster GH14327p pro...   165   5e-41
AE014296-1418|AAF50446.1|  245|Drosophila melanogaster CG7188-PA...   165   5e-41
AE014296-1419|AAN12018.1|  237|Drosophila melanogaster CG7188-PB...   161   1e-39
AY075204-1|AAL68072.1|  365|Drosophila melanogaster AT14090p pro...    43   5e-04
AE014297-619|AAF54013.2|  365|Drosophila melanogaster CG1287-PA ...    43   5e-04
BT009945-1|AAQ22414.1|  341|Drosophila melanogaster RH72958p pro...    36   0.062
AE014298-1546|AAF47994.1|  341|Drosophila melanogaster CG2076-PA...    36   0.062
M20231-1|AAA28720.1| 1135|Drosophila melanogaster protein ( D.me...    30   4.1  
M20230-1|AAA28721.1| 1501|Drosophila melanogaster protein ( D.me...    30   4.1  
J03131-2|AAA28719.1| 1135|Drosophila melanogaster protein ( D.me...    30   4.1  
J03131-1|AAA28718.1| 1501|Drosophila melanogaster protein ( D.me...    30   4.1  
AY119496-1|AAM50150.1| 1135|Drosophila melanogaster GH10824p pro...    30   4.1  
AE014134-1264|AAF52505.1| 1135|Drosophila melanogaster CG5125-PA...    30   4.1  
AE014134-1263|AAF52504.3| 1501|Drosophila melanogaster CG5125-PB...    30   4.1  
AY069428-1|AAL39573.1|  844|Drosophila melanogaster LD13864p pro...    29   5.4  
AE013599-91|AAF57324.2|  844|Drosophila melanogaster CG8426-PA p...    29   5.4  

>AY058377-1|AAL13606.1|  245|Drosophila melanogaster GH14327p
           protein.
          Length = 245

 Score =  165 bits (402), Expect = 5e-41
 Identities = 86/210 (40%), Positives = 129/210 (61%)
 Frame = -2

Query: 775 PPVRQHXKXVTPH***HASLHLLGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNT 596
           P VR+H   V       A+   +G  + M      G L+A+    L+L L    D+GKN 
Sbjct: 25  PYVREHLSKVYMVLGSTAAATAMGAMLQMRDFLDLGVLAAVATLVLVLGLHFYKDDGKNY 84

Query: 595 NLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWX 416
             RLG L  FG  SG ++GPLL Y+  ++P+II++AL GT + F+  S +A+LAE+G + 
Sbjct: 85  YTRLGMLYAFGFCSGQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYL 144

Query: 415 XXXXXXXXXXTSMSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSK 236
                      +M+L++L N+  +S+F+    LY+G+ +M  F+++DTQ I+EK R G++
Sbjct: 145 YLGGMLVSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNR 204

Query: 235 DFVQHALELFIDFIGMFRRLVIILTQKEEQ 146
           D VQHAL+LF D + MFRRL+IILTQKEE+
Sbjct: 205 DVVQHALDLFFDVLSMFRRLLIILTQKEER 234


>AE014296-1418|AAF50446.1|  245|Drosophila melanogaster CG7188-PA,
           isoform A protein.
          Length = 245

 Score =  165 bits (402), Expect = 5e-41
 Identities = 86/210 (40%), Positives = 129/210 (61%)
 Frame = -2

Query: 775 PPVRQHXKXVTPH***HASLHLLGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNT 596
           P VR+H   V       A+   +G  + M      G L+A+    L+L L    D+GKN 
Sbjct: 25  PYVREHLSKVYMVLGSTAAATAMGAMLQMRDFLDLGVLAAVATLVLVLGLHFYKDDGKNY 84

Query: 595 NLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWX 416
             RLG L  FG  SG ++GPLL Y+  ++P+II++AL GT + F+  S +A+LAE+G + 
Sbjct: 85  YTRLGMLYAFGFCSGQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYL 144

Query: 415 XXXXXXXXXXTSMSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSK 236
                      +M+L++L N+  +S+F+    LY+G+ +M  F+++DTQ I+EK R G++
Sbjct: 145 YLGGMLVSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNR 204

Query: 235 DFVQHALELFIDFIGMFRRLVIILTQKEEQ 146
           D VQHAL+LF D + MFRRL+IILTQKEE+
Sbjct: 205 DVVQHALDLFFDVLSMFRRLLIILTQKEER 234


>AE014296-1419|AAN12018.1|  237|Drosophila melanogaster CG7188-PB,
           isoform B protein.
          Length = 237

 Score =  161 bits (391), Expect = 1e-39
 Identities = 84/207 (40%), Positives = 126/207 (60%)
 Frame = -2

Query: 775 PPVRQHXKXVTPH***HASLHLLGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNT 596
           P VR+H   V       A+   +G  + M      G L+A+    L+L L    D+GKN 
Sbjct: 25  PYVREHLSKVYMVLGSTAAATAMGAMLQMRDFLDLGVLAAVATLVLVLGLHFYKDDGKNY 84

Query: 595 NLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERGSWX 416
             RLG L  FG  SG ++GPLL Y+  ++P+II++AL GT + F+  S +A+LAE+G + 
Sbjct: 85  YTRLGMLYAFGFCSGQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYL 144

Query: 415 XXXXXXXXXXTSMSLMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRRMGSK 236
                      +M+L++L N+  +S+F+    LY+G+ +M  F+++DTQ I+EK R G++
Sbjct: 145 YLGGMLVSVINTMALLSLFNMVFKSYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNR 204

Query: 235 DFVQHALELFIDFIGMFRRLVIILTQK 155
           D VQHAL+LF D + MFRRL+IILTQK
Sbjct: 205 DVVQHALDLFFDVLSMFRRLLIILTQK 231


>AY075204-1|AAL68072.1|  365|Drosophila melanogaster AT14090p
           protein.
          Length = 365

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
 Frame = -2

Query: 319 LYLGLMLMCGFVLFDTQLIIEKRRMGSK------DFVQHALELFIDFIGMFRRLVIILTQ 158
           LY GL+L  GF+L+DTQ I++   +  +      D + HAL +++D + +F R+ IIL  
Sbjct: 300 LYGGLILFSGFLLYDTQRIVKSAELYPQYSKFPYDPINHALAIYMDALNIFIRIAIILAG 359

Query: 157 KEEQ 146
            +++
Sbjct: 360 DQKR 363


>AE014297-619|AAF54013.2|  365|Drosophila melanogaster CG1287-PA
           protein.
          Length = 365

 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
 Frame = -2

Query: 319 LYLGLMLMCGFVLFDTQLIIEKRRMGSK------DFVQHALELFIDFIGMFRRLVIILTQ 158
           LY GL+L  GF+L+DTQ I++   +  +      D + HAL +++D + +F R+ IIL  
Sbjct: 300 LYGGLILFSGFLLYDTQRIVKSAELYPQYSKFPYDPINHALAIYMDALNIFIRIAIILAG 359

Query: 157 KEEQ 146
            +++
Sbjct: 360 DQKR 363


>BT009945-1|AAQ22414.1|  341|Drosophila melanogaster RH72958p
           protein.
          Length = 341

 Score = 35.9 bits (79), Expect = 0.062
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
 Frame = -2

Query: 319 LYLGLMLMCGFVLFDTQLIIEKRRMGSK------DFVQHALELFIDFIGMFRRLVIILT 161
           LY GL+L  GF+L+DTQ ++ +  +  +      D +  ++ +++D + +F R+V IL+
Sbjct: 277 LYGGLVLFSGFLLYDTQRMVRRAEVYPQYSYTPYDPINASMSIYMDVLNIFIRIVTILS 335


>AE014298-1546|AAF47994.1|  341|Drosophila melanogaster CG2076-PA
           protein.
          Length = 341

 Score = 35.9 bits (79), Expect = 0.062
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
 Frame = -2

Query: 319 LYLGLMLMCGFVLFDTQLIIEKRRMGSK------DFVQHALELFIDFIGMFRRLVIILT 161
           LY GL+L  GF+L+DTQ ++ +  +  +      D +  ++ +++D + +F R+V IL+
Sbjct: 277 LYGGLVLFSGFLLYDTQRMVRRAEVYPQYSYTPYDPINASMSIYMDVLNIFIRIVTILS 335


>M20231-1|AAA28720.1| 1135|Drosophila melanogaster protein (
           D.melanogaster ninaCencoded short protein mRNA, complete
           cds. ).
          Length = 1135

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 700 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 545
           Y+    R   G + + + A LML+   TP N  +T   L Y L FG T  MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495


>M20230-1|AAA28721.1| 1501|Drosophila melanogaster protein (
           D.melanogaster ninaCencoded long protein mRNA, complete
           cds. ).
          Length = 1501

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 700 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 545
           Y+    R   G + + + A LML+   TP N  +T   L Y L FG T  MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495


>J03131-2|AAA28719.1| 1135|Drosophila melanogaster protein (
           D.melanogaster ninaCprotein genes, complete cds. ).
          Length = 1135

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 700 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 545
           Y+    R   G + + + A LML+   TP N  +T   L Y L FG T  MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495


>J03131-1|AAA28718.1| 1501|Drosophila melanogaster protein (
           D.melanogaster ninaCprotein genes, complete cds. ).
          Length = 1501

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 700 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 545
           Y+    R   G + + + A LML+   TP N  +T   L Y L FG T  MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495


>AY119496-1|AAM50150.1| 1135|Drosophila melanogaster GH10824p
           protein.
          Length = 1135

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 700 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 545
           Y+    R   G + + + A LML+   TP N  +T   L Y L FG T  MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495


>AE014134-1264|AAF52505.1| 1135|Drosophila melanogaster CG5125-PA,
           isoform A protein.
          Length = 1135

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 700 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 545
           Y+    R   G + + + A LML+   TP N  +T   L Y L FG T  MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495


>AE014134-1263|AAF52504.3| 1501|Drosophila melanogaster CG5125-PB,
           isoform B protein.
          Length = 1501

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 700 YVDMFTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMS 545
           Y+    R   G + + + A LML+   TP N  +T   L Y L FG T  MS
Sbjct: 444 YLGDGNRGATGRVESSIKAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMS 495


>AY069428-1|AAL39573.1|  844|Drosophila melanogaster LD13864p
           protein.
          Length = 844

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 372 SDIDVNSVIN-VPPRNSQ-LPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRGPM 545
           SD  VN +++  P +N Q LP +ASI A     +   + S +     G++    S   P 
Sbjct: 383 SDTQVNKIVSSTPSKNQQQLPTAASIVATSAMQSQSSIGSCSSTGGTGASQSASSGNNPG 442

Query: 546 LMPDVNPN 569
             P V PN
Sbjct: 443 NNPAVQPN 450


>AE013599-91|AAF57324.2|  844|Drosophila melanogaster CG8426-PA
           protein.
          Length = 844

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 372 SDIDVNSVIN-VPPRNSQ-LPRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRGPM 545
           SD  VN +++  P +N Q LP +ASI A     +   + S +     G++    S   P 
Sbjct: 383 SDTQVNKIVSSTPSKNQQQLPTAASIVATSAMQSQSSIGSCSSTGGTGASQSASSGNNPG 442

Query: 546 LMPDVNPN 569
             P V PN
Sbjct: 443 NNPAVQPN 450


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,441,338
Number of Sequences: 53049
Number of extensions: 715934
Number of successful extensions: 1736
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1734
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3602427675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)