Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc18m04
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076     31   1.4  
06_01_0599 - 4327671-4330034                                           29   3.3  

>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
          Length = 748

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -1

Query: 808 DSIVHKHGIAREHTAKVIHLXENLRSVL*TTRFIKTAFEIKGFIDKLRFIITSLGN*F-S 632
           D  VH HG+   HT+ ++ +   + S L   + +   F +  F+  ++ +++++   F S
Sbjct: 125 DRTVHAHGLRLRHTSHLVWIGYLICSKLPDDKSLSITFAVLWFLCFVKLVLSAVNRWFAS 184

Query: 631 YKFKLA 614
           Y F  A
Sbjct: 185 YSFHTA 190


>06_01_0599 - 4327671-4330034
          Length = 787

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 21  EELVKLVQXPIPITLNSTLLLNTQVGIKNLKK 116
           E++VKL   P PIT++STL    Q+G  +L K
Sbjct: 403 EQMVKLNVRPNPITISSTLSACAQLGALSLGK 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,557,054
Number of Sequences: 37544
Number of extensions: 302516
Number of successful extensions: 540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)